SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17541

Length: 1627 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17541

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8406	28/29

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial Rho GTPase n=2 Tax=Selaginella moellendorffii RepID=D8RQC7_SELML	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion transport along microtubule	GO:0047497	Biological Process	83%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	83%
Blast2go	pollen tube growth	GO:0009860	Biological Process	83%
Blast2go	mitochondrion organization	GO:0007005	Biological Process	83%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	83%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	83%
Blast2go	GTP binding	GO:0005525	Molecular Function	83%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF hand associated, type-1	IPR013566	-	-
Sma3	EF hand associated, type-2	IPR013567	-	-
Sma3	Mitochondrial Rho-like	IPR013684	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A849

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 154 aas, putative chimeric sequence, your sequence is shorter than subject: 52 - 196

Fln protein: MGSTGGSGSIGGVTNVRVAVIGDSGTGKSSLIVSVATDSFPERAPPRFAPN*

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCAATGGGTGTCAAACAATAAAACTAATAAATTGCAAATCCCAGCTGCTACGAGACCAGAGAATAGCATGAGGTTAGATAGTTTTCCGTCGCTTTAATCATCACATTAGAGAAATAGAGTAGCAGCTTTGCAGCGGCGACACAGACGCCAAACGCAGTTCAGGGGAGCTGCTTCTTTTGTCAAACATAAAGCAAG_-_ATGGGGAGCACAGGTGGAAGTGGAAGTATTGGTGGAGTAACAAATGTTCGTGTAGCGGTGATAGGAGACAGTGGTACTGGGAAGTCTAGTTTGATTGTTTCTGTAGCCACTGATTCGTTTCCAGAGAGGGCTCCTCCACGTTTTGCCCCCAACTAA___GACTCCCTCCAGATTTCTATCCTGATCGTGTTCCACTCACCATAATTGATACATCATCCAGACCCGAGGACCGTAACAAGCTAGGAGCAGAATGCAAGAAGGCAGATGCAATTGTTCTAACATATGCATGTGAACAACCTATCACACTTGAGCGTCTGTCTTCCTACTGGCTACCAGAGCTTCGTCGCTTAGAAGTGAAAGTGCCAGTCATTGTGGTTGGTTGTAAATTAGATCTGCGAGATGATCAACAACTAAGTTTGGAGCAAGTAATGACACCAATCATGCATCAGTTTCGAGAGATTGAGACATGTATAGAGTGTTCAGCACTGAAGCAGATTCAGGTTGCAGAAGTTTTTTACTATGCTCAAAAAGCAGTTCTTCATCCAACAGCACCTTTATTTGATCAAGAAACCCAAACACTAAAGCCTCGTTGTGTAAGGGCATTGAAAAGAATCTTCATTCTATGCGATCATGACAGAGATGGAGCTCTTAGTGATGCTGAACTGAATGATTTTCAGGTTAAATGCTTTAATGCTCCTCTACAGCCTTCGGAAATTGTTGGGGTGAAGAAGGTTGTTTCGGAAAAACTTCCAGAAGGCGTCAATGAACATGGCCTCACATTGACAGGATTTCTTTTTCTCCATGCACTTTTTATTGAAAAAGGACGGCTTGAAACCACCTGGACAGTTTTGCGAAAGTTTGGTTATAATGATGAGATTAAGCTTAGAGATGACCTCCTTCCAACAGCACAGTTCAAACGGGCACCCGATCAGAGCATAGAGTTAACCAGTGAAGCAGTGGATTTCCTAAGGGGTATCTTTTCGTTGTTTGACATTGATGGTGATGGGGCACTGCGACCACAAGAGCTTGAAGATCTTTTTTCCACAGCTCCAGAAAGTCCATGGGAAGAAGGTATCTACGAGGATTCAATGGAGAAGAATGCATTGGGAGCTGTGACCATAAATGGATTTCTATCTGCGTGGGCTCTCATGACTCTTATGGATCCTGTCAAAAGCCTTGCTTATTTAATTTATATTGGGTACCCTGGAGATCCTGTTTCAGTATTTCATGTGACCCGTCGTCGACGGCTTGACCGCAAAAGATTAAATTCACAGAGGAACGTCTTTCAGTGTTTTGTTTTTGGACCTGGTAATGCTGGGAAGTCTGCATTACTCAATGCTCTAATTGGCAGGCCATTCGTTGAAAAATACACACCAACAAAAGGTGATTGTTATGCTACAAATGTTATTG

Fln Alignment:

Contig17541___VRVAVIGDSGTGKSSLIVSVATDSFPERAPPRFAPN
D5A849________________IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
362		40		60	1.0
363			40	60	1.0
366	40	60			1.0
369		60		40	1.0
370		60		40	1.0
371	60		40		1.0
372	60		40		1.0
375	60		40		1.0
376	60			40	1.0
377		40	60		1.0
382	40	60			1.0
451	80	20			0.995493
452	80		20		0.995493
522	80			20	0.995493
524			20	80	0.995493
530		20	80		0.995493
535			20	80	0.995493
539			20	80	0.995493
540		80		20	0.995493
546	20		80		0.995493
567			11	88	0.923564
570	88	11			0.923564
571	88	11			0.923564
572			88	11	0.923564
575	88		11		0.923564
576	88	11			0.923564
577	88			11	0.923564
580	11		88		0.923564
1018			25	75	0.996473
1019		75		25	0.996473
1021	75		25		0.996473
1027		25		75	0.996473
1030			25	75	0.996473
1031			25	75	0.996473
1032	75	25			0.996473
1036		25	75		0.996473
1038	75	25			0.996473
1039	75			25	0.996473
1040	75	25			0.996473
1070		20		80	0.995493
1074	80			20	0.995493
1075	80		20		0.995493
1077		20	80		0.995493
1078		20		80	0.995493
1083		20		80	0.995493
1085	80		20		0.995493
1088	80	20			0.995493
1090	20		80		0.995493
1105	71	28			1.0
1107	71			28	1.0
1108		28	71		1.0
1109	71		28		1.0
1118		71	28		1.0
1121			28	71	1.0
1122		71		28	1.0
1128			71	28	1.0
1178	87	12			0.992554
1181		12	87		0.992554
1185			12	87	0.992554
1186	12			87	0.992554
1190	87			12	0.992554
1191	87		12		0.992554
1193		12	87		0.992554
1194			87	12	0.992554
1200	12			87	0.992554
1351			10	90	0.90298
1356		10		90	0.90298
1359			90	10	0.90298
1360		90	10		0.90298
1362		10		90	0.90298
1363			90	10	0.90298
1365			90	10	0.90298
1367	10			90	0.90298
1427		33		66	0.997452
1460		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain