SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17430

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene17430
CGTCGTGACCTTGGCTGTCACTCAGGGGTGCGATCTCGCTCAACCTGGGCCAAGGCCACGCCAGATGCAGAGCAGAAATTGGGTATGTGGCGGCCGCCCACTGTTGGGGTAAGGGCATCGTCACTCAAGCCGTTAAGTTGGCGGTGTCTGCTGCGTTCCAGGAGCTGCCAGATCTGGAGAGGATTGAAGGGCTGGTGGAACCCCAAAATGTGGCGTCGCAGAGAGTTTTGGAGAAGGTGGGATTTGTTAAGGAAGGGTTGCTGTTCAGGTACTTGACTTTCAAGGGCAAAACCAGGGATTTCTTTGTTTATCGGATTCTCTCTGCTGATTTGCCAGTCGCTGTTCCTGCATAAGCCTACCAGTCATTTAACTATGGTTTCATTATGTGTGTAACNCATCTAGATCTGTGTCTTTTGGCGGTTTCGC

Ace file of the UniGene uagpf_v2_unigene17430 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21586	1/2
SustainPine v2.0	sp_v2.0_unigene60433	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj\|BAB01471.1\| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb\|ABN04781.1\| At3g22560 [Arabidopsis thaliana] gb\|AEE76653.1\| GCN5-related N-acetyltransferase (G	-	-	2.0e-13	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	n-	-	-	3.10163e-35	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	3.10163e-35	70%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW96

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 117 - 179

Fln protein: S*PWLSLRGAISLNLGQGHARCRAEIGYVAAAHCWGKGIVTQAVKLAVSAAFQELPDLERIEGLVEPQNVASQRVLEKVGFVKEGLLFRYLTFKGKTRDFFVYRILSADLPVAVPA*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGTGCGATCTCGCTCAACCTGGGCCAAGGCCACGCCAGATGCAGAGCAGAAATTGGGTATGTGGCGGCCGCCCACTGTTGGGGTAAGGGCATCGTCACTCAAGCCGTTAAGTTGGCGGTGTCTGCTGCGTTCCAGGAGCTGCCAGATCTGGAGAGGATTGAAGGGCTGGTGGAACCCCAAAATGTGGCGTCGCAGAGAGTTTTGGAGAAGGTGGGATTTGTTAAGGAAGGGTTGCTGTTCAGGTACTTGACTTTCAAGGGCAAAACCAGGGATTTCTTTGTTTATCGGATTCTCTCTGCTGATTTGCCAGTCGCTGTTCCTGCATAA___GCCTACCAGTCATTTAACTATGGTTTCATTATGTGTGTAACtCATCTAGATCTGTGTCTTTTGGCGGTTTCGC

Fln Alignment:

Contig17430___GAISLNLGQGHARCRAEIGYVAAAHCWGKGIVTQAVKLAVSAAFQELPDLERIEGLVEPQNVASQRVLEKVGFVKEGLLFRYLTFKGKTRDFFVYRILSADLPV
A9NW96________________GGISLNRGEGHARCRGEIGYVTAAHCWGKGIVTQAVKLGVSAAFQDLPDLERIEGLVEPQNLASQRVLEKAGFVKEGLLSRYLNFKGKTRDFYVYRILSADFPV

SNPs (tot: 3)

Position	A %	C %	G %	Probability
230		66	33	0.997452
237		66	33	0.997452
242	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain