SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17377

Length: 1648 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17377

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23516	80/112
SustainPine v2.0	sp_v2.0_unigene71244	3/112
SustainPine v2.0	sp_v2.0_unigene80443	17/112
SustainPine v2.0	sp_v2.0_unigene81653	9/112

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=2 Tax=Populus trichocarpa RepID=B9HSL6_POPTR	-	-	4.0e-23	56%
FL-Next	tr=DREB protein; Taxus cuspidata (Japanese yew).	-	-	0.0	70%
Blast2go	ap2 erf domain-containing transcription factor	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	response to trehalose stimulus	GO:0010353	Biological Process	76%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	76%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	76%
Blast2go	response to water deprivation	GO:0009414	Biological Process	76%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	76%
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	76%
Blast2go	regulation of protein localization	GO:0032880	Biological Process	76%
Blast2go	lateral root development	GO:0048527	Biological Process	76%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	76%
Blast2go	regulation of triglyceride catabolic process	GO:0010896	Biological Process	76%
Blast2go	seed development	GO:0048316	Biological Process	76%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B2CSN6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 123 aas, putative chimeric sequence, your sequence is shorter than subject: 281 - 410

Fln protein: MKGGNREAQCSAVGQESGGRTSPTTVRPSMRCKCKRKGGPDNIKFQYRGVRQRSWGKWVAEIRQPGKRTRRWLGTFATAEQAAQAYDNAAILLYGSKAHLNLQPSGWDQSKSSSHSSKLRPLLPRITVTRPPAIHGTIPGPNPNPNISGAFPCGYFGTLKIPDFWPAAMRAAHTDVTYHHPVIDPKRETTIEQRSVFHLEESRVPTQQCNGKEVLHLESSPLKTDKLQENFRTENTGLQSHRLGDPDQLSGIQGGIVGDELSQGFYSETAGNVTEPRNSF*

Protein Length: 282

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGAGGAAGGAAGCATCCGTCCTTGACTCGGAGTTTAACGTCGTGACCTTGGCTGTCACTCGGGGAGGCACAGCAGAGGCAGAATTTGCCCATTTATTCTTGTTTCAGGCCGTCAAGAGAT_-_ATGAAAGGCGGAAATCGAGAAGCACAGTGTTCAGCGGTTGGCCAAGAGAGCGGTGGACGCACCAGCCCCACAACTGTACGGCCCTCCATGAGGTGCAAGTGTAAGCGCAAGGGAGGGCCGGACAACATCAAGTTCCAATACAGAGGCGTTCGGCAACGCAGTTGGGGAAAATGGGTTGCAGAGATCAGACAGCCCGGAAAACGAACCAGAAGGTGGCTAGGCACGTTTGCTACAGCCGAGCAGGCCGCGCAGGCTTACGACAACGCTGCGATCTTACTCTACGGCTCCAAAGCCCATCTTAATCTCCAGCCCTCTGGTTGGGATCAGTCCAAATCCTCCTCCCACTCCTCTAAACTCAGGCCACTGCTCCCGCGCATTACGGTTACACGTCCGCCGGCTATTCATGGTACTATCCCTGGCCCTAACCCTAACCCTAATATTTCTGGAGCCTTTCCATGTGGTTATTTTGGAACCCTTAAGATTCCAGATTTCTGGCCAGCCGCGATGAGAGCAGCACACACCGACGTTACATATCACCATCCCGTTATCGACCCAAAGCGGGAAACAACAATTGAGCAGCGTAGCGTCTTTCATCTGGAAGAATCTAGGGTTCCTACACAGCAGTGCAATGGCAAGGAAGTACTGCATCTTGAATCCTCTCCATTGAAAACAGATAAGCTCCAAGAAAATTTCAGAACCGAGAATACGGGACTGCAATCTCATAGACTGGGTGACCCTGATCAGCTGTCTGGGATTCAAGGTGGTATCGTCGGCGATGAGCTCAGTCAAGGCTTTTATAGCGAGACCGCTGGGAACGTTACCGAGCCAAGAAACTCATTTTGA___TGGAGAATCGAGAGATGATAATCTTGCTGCTTCCTTGCACGAGTTGCAGTACAGCGGTGGCCCTGGCCGTCACTCCGGTTTCATGTGGCACTATAATATCAAACACGACTATTACTACGACGAGACCAAAAGCAGCACGTTGCCCGAGACCGACAACCAACTCTGGGATTATTCCGATTAAAGTTCTACTTAGTTGCAGGTTTTGTTCGACTCTGAAACCACTTTCATGACCGGGCCTGCGTTAAAGAAGGGCTGCAATTCACGGACCGTCAAACCAAAATAACTGTCCTGTCATGATGTCTTCGTGGCTTATTGATCTGCACAGCATTCACGAGTAAATGTCAAGGTGAGATGATGGGATTCCTCTCAGTTAAAGGAATATTCATCACAGAAAATCTTACAAAACATATATTTCCTTTCATCTTGCCAAGTAATTAGTTTGAAATGAATAAACATATGAGAAGACTATGATTTTACTTTCAGCCTGGCAAGTTTTAGTATCGAAAAATTCCTTTATTTAAGCATATAATTTTTCCATTCGTTTACTTTACAAATTGTACATGCTTTCCAACTAGTTTAAGTTTGAAGCTATCTTTATAGCCAAAATCTCGTGCATTCATTTGCTCAGTTTTCTTTGTCCATGTCCATTAACACACGAG

Fln Alignment:

Contig17377___KRKGGPDNIKFQYRGVRQRSWGKWVAEIRQPGKRTRRWLGTFXXXXXXXXXXXXXXILLYGSKAHLN
B2CSN6________________KGKGGPENGRCKYRGVRQRTWGKWVAEIRQPNRGDRLWLGTFPTAEEAALAYDNAARIMYGSCARLN

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
454		90	9		0.999842
455	90			9	0.999842
457	9	90			0.999872
465		10		90	0.999898
468			90	10	0.999898
469		10	90		0.999898
676	83		16		0.999991
737			11	88	0.923564
738	11			88	0.923564
740	88	11			0.923564
746	88	11			0.923564
747	88			11	0.923564
749	88			11	0.923564
750	88	11			0.923564
751	11			88	0.923564
754	88	11			0.923564
755	11		88		0.923564
810	87			12	0.992554
812		12		87	0.992554
814	87	12			0.992554
832			85	14	0.993533
833	85			14	0.993533
834	85	14			0.993533
835	85		14		0.993533
836	85	14			0.993533
869	90		10		0.90298
880		10	90		0.90298
883		90		10	0.90298
885	10			90	0.90298
889		90		10	0.90298
890	90	10			0.90298
922		10	90		0.90298
923	90			10	0.90298
932		10	90		0.90298
989		12	87		0.992554
990	87		12		0.992554
992		12	87		0.992554
994	87			12	0.992554
997	87	12			0.992554
999		87		12	0.992554
1003	87	12			0.992554
1004			87	12	0.992554
1005	87		12		0.992554
1007		12	87		0.992554
1021			11	88	0.923564
1024		88	11		0.923564
1026			11	88	0.923564
1027	11		88		0.923564
1029	88	11			0.923564
1030		88		11	0.923564
1031			88	11	0.923564
1032	88		11		0.923564
1034		11		88	0.923564
1039		11	88		0.923564
1041	88	11			0.923564
1042	11	88			0.923564
1064			8	25	1.0
1066	25	75			1.0
1179		60		40	1.0
1207	95	4			0.996599
1208	95			4	0.996599
1209		95		4	0.996599
1210		95	4		0.996599
1211	95		4		0.996599
1214			4	95	0.996599
1332		60		40	1.0
1467	23	46			1.0
1484		10		90	0.90298
1485		10		90	0.90298
1488	88		11		0.923564
1491	87		12		0.992554
1494		12	87		0.992554
1495	85			14	0.993533
1496	85	14			0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
566	583	CCCTAA CCCTAA CCCTAA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain