SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17376

Length: 871 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17376

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1328	35/36

Source	Descriptions	Term	Type	Identity
AutoFact	dynamin-related protein 1E [Arabidopsis thaliana] sp\|Q9FNX5.1\|DRP1E_ARATH RecName: Full=Dynamin-related protein 1E; AltName: Full=Dynamin-like protein 4; AltName: Full=Dynamin-like protein DLP2; AltName: Full=Dynamin-like protein E gb\|AAL16262.1\|AF428332_	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dynamin-related protein 1e-like isoform 1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	92%
Blast2go	GTP binding	GO:0005525	Molecular Function	92%
Blast2go	GTPase activity	GO:0003924	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
217		33		66	0.997452
219		66		33	0.997452
222			33	66	0.997452
228		33	66		0.997452
232			33	66	0.997452
233	66		33		0.997452
235	66			33	0.997452
237	66			33	0.997452
238		33	66		0.997452
239	33		66		0.997452
249	60		40		1.0
250			60	40	1.0
251	60		40		1.0
253		40	60		1.0
254	60	40			1.0
255	60			40	1.0
257	60		40		1.0
259		40	60		1.0
266	60			20	0.99255
267	60	20		20	0.99255
268	20	20		60	0.99255
269	20		80		0.995493
287	50		50		1.0
289		50	50		1.0
293	50			50	1.0
294		50	50		1.0
295		50		50	1.0
296			50	50	1.0
297	50			50	1.0
299	50		50		1.0
301	50			50	1.0
302			50	50	1.0
304	50	50			1.0
306	50	50			1.0
307	50			50	1.0
308	50	50			1.0
502	92	7			0.999664
505	92			7	0.999664
629	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain