SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17307

Length: 1111 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17307

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22724	32/35

Source	Descriptions	Term	Type	Identity
AutoFact	monothiol glutaredoxin-S14 [Arabidopsis thaliana] sp\|Q84Y95.2\|GRS14_ARATH RecName: Full=Monothiol glutaredoxin-S14, chloroplastic; Short=AtGRXcp; Short=AtGrxS14; AltName: Full=CAX-interacting protein 1; Short=CXIP1; Flags: Precursor gb\|AAK60300.1\|AF385708	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	grx5	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Monothiol glutaredoxin-related	IPR004480	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLE0

Fln msg:

Fln protein: MPMAMSQSLQSPFSITSTNSISQFRRTIPFVGHFNFKAAVCPSGLFAKENSSYTARWHRASFKRRSSPLQCTASYGPTGSTGALTPELKATLDKFITSNKVVLFMKGTKDFPQCGFSNTVIQILKSLNVPFETFNILENETLRQGLKEYSSWPTFPQLYIDGEFFGGCDITIEAYKSGELQELLERAICS*

Protein Length: 192

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGCCGAAACGTCGTGACCTTGGCTGTCACTCATT_-_ATGCCAATGGCAATGTCCCAATCTCTCCAATCTCCTTTCTCCATTACCTCCACAAATTCAATTTCGCAGTTTAGACGAACAATTCCCTTTGTTGGGCATTTCAACTTCAAAGCTGCCGTATGCCCAAGTGGGTTATTTGCAAAAGAAAATTCTAGTTACACTGCAAGATGGCACAGAGCCAGCTTCAAACGAAGAAGCAGCCCATTGCAATGCACCGCTAGTTATGGACCAACTGGCAGCACAGGAGCATTGACACCTGAGCTGAAGGCAACCCTGGACAAGTTCATTACATCAAATAAAGTGGTTCTTTTCATGAAAGGAACAAAGGATTTTCCCCAGTGTGGGTTTTCAAACACTGTTATACAGATATTGAAGTCTTTGAATGTGCCATTTGAAACCTTCAATATTCTTGAGAATGAAACATTGCGCCAGGGATTAAAGGAATACTCCAGCTGGCCCACTTTTCCCCAACTCTATATTGATGGAGAGTTTTTTGGTGGATGTGACATTACTATTGAAGCATATAAATCAGGAGAGCTACAGGAGTTATTGGAGAGAGCAATATGCTCTTGA___TAATATCTGGCATGTTGTTTATGCATACATAATAGTTCTACACATCTTTTGTCGATTTATTAACATCTTTTGAATCTGATGTCTGAATTCGTTGAAGTTGGTTTCAGACGGCATTCTGCTATACAGTAGTTGTTCTCTCTGTTTTGATAAACATGATCCAAAACACATGTAACGATAGTATTAAATAATTGATGTCCATTCCTTATCTAGGATGCTACTTTCAGAATCCTTTAATTCCCTTCATTGTGCGAAATCTGTCAGTGTTCCTTTATTATGGGCTTGATACAATTATACACAGTGCATTCCCACTATAAGTCGTGATGGATATATGAACTTTGAAGTACCCTCCTCTTGAAAGGTTTTCCTAAAAGCATCGCGATGGATATATGTAGTGTCATAAAACCATCGTGATGGATATACGAAGTACCTTCCTTAAAGATTTTCCTAAAAGCATCCGAACGGTAGATAGCACTTCGC

Fln Alignment:

Contig17307___IMPMAMSQSLQSPFSITSTNSISQFRRTIPFVGHFNFKAAVCPSGLFAKENSSYTARWHRASFKRRSSP-LQCTASYGPTGSTGALTPELKATLDKFITSNKVVLFMKGTKDFPQCGFSNTVIQILKSLNVPFETFNILENETLRQGLKEYSSWPTFPQLYIDGEFFGGCDITIEAYKSGELQELLERAICS
A9NLE0________________MMSMATSQSLQSPFSITSTISSSQFRRTNPLLGHFSFKAAVCPSGLFAKENSSRTARRHRAGFKRRSSTALQCTASHGPTGSTGALTPELKATLDKFITSNKVVLFMKGTKDFPQCGFSNTVVQVLKSLNVPFETFNILENETLRQGLKQYSSWPTFPQLYIDGEFFGGCDITIEAYKSGELQELLERAICS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
368		23	76		1.0
371		15		84	0.999986
372		84	15		0.999986
374			16	83	0.999991
375	16			83	0.999991
376		16		83	0.999991
378	83			16	0.999991
381	76		23		1.0
382	76	15		7	0.999983
383	76	7		15	0.999983
385			76	23	1.0
386	76	15	7		0.999983
389	69	7	7	15	0.999985
390	69	15		15	0.999985
850	75	25			0.996473
855		25		75	0.996473
856		25	75		0.996473
857		75		25	0.996473
860	75		25		0.996473
863			25	75	0.996473
867		25	75		0.996473
868	75			25	0.996473
869	75	25			0.996473
870	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain