SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17305

Length: 1110 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17305

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22362	1/71
SustainPine v2.0	sp_v2.0_unigene23493	58/71
SustainPine v2.0	sp_v2.0_unigene26972	8/71

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 n=79 Tax=Embryophyta RepID=VATL1_ARATH	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	v-type proton atpase 16 kda proteolipid subunit-like isoform 1	-	-	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	0.0	98%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	98%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-

Full-Lengther Next Prediction

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
362	88		11		0.923564
364		11	88		0.923564
366			88	11	0.923564
368	11		88		0.923564
370	88	11			0.923564
371			88	11	0.923564
372		88		11	0.923564
373			11	88	0.923564
374			11	88	0.923564
375	87	12			0.992554
378			87	12	0.992554
379		12	87		0.992554
382		12	75		0.975346
383	12		87		0.992554
384	12	87			0.992554
463		14	85		0.993533
465		83		16	0.994512
471		16		83	0.994512
472		16	83		0.994512
477		20	80		0.995493
479	80		20		0.995493
481	80	20			0.995493
482	20			80	0.995493
483	80	20			0.995493
485		20	80		0.995493
486	20		80		0.995493
517	66	33			1.0
518	66		33		1.0
521	66		33		1.0
522	66			33	1.0
523		66	33		1.0
524	33	66			1.0
526		33	66		1.0
527	66			33	1.0
528	66			33	1.0
533	66		33		1.0
534	66			33	1.0
535	66	33			1.0
536	33			66	1.0
538		66		33	1.0
539		33		66	1.0
571	77		22		0.999999
574	77			22	0.999999
576	25		75		1.0
577		25	75		1.0
581	75			25	1.0
583		75	25		1.0
584		25		75	1.0
588	25		75		1.0
589		25	75		1.0
592	12			87	0.992554
661	93		6		0.999264
662			93	6	0.999264
664		93	6		0.999264
666	93		6		0.999264
668		6	93		0.999264
672			6	93	0.999264
673		6		93	0.999264
677	2	13	77	2	1.0
678		5	94		0.998397
679	2		81	16	1.0
681	81		13	2	1.0
685		13		86	1.0
687		86		13	1.0
690	86		13		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain