SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17283

Length: 2332 nt

UniGene Fasta

>uagpf_v2_unigene17283
CGTCGTGACCTTGGCTGTCACTCAATTGAGTCTCCATGGTTCAACTATAAAACGTCGTGACCTTGGCTGTCACTCAATTCTCAGCCCTCTCTGTCACCGATCAGCTGAGATTTCAAGTGAGAATTGAGCTTTGAAAAATATTTCCAGTGTGACTACTCGCTCCTACACTCTCAGGAGGGTTGCTAGCAATATTGATTTGCCCACGATGAATGCTCTGGCTGCAACAAATCGTAATTTCAAGCGAGCAGCTCGGCTTCTGGCGTTGGATTCCAAGCTTGAAAAAAGTTTGCTCATTCCTTTTCGAGAGATCAAGGTTGAGTGCACCATTCCTAAAGATGATGGAACTTTAGCCTCATATGTAGGCTTTAGGGTGCAACATGACAATGCACGGGGACCCATGAAGGGAGGGATACGCTACCATCCAGAGGTTGATCCGGATGAGGTAAATGCCTTAGCACAACTAATGACATGGAAGTCTGCTGTAGCTAACATACCATATGGGGGAGCAAAGGGTGGTATTGGTTGCGACCCACGGAGTTTAAGTTTCAGTGAGTTAGAAAGGCTTACTCGTGTCTTTACTCAGAAGATCCATGATTTGATTGGAGTCCACATAGATGTTCCAGCACCTGACATGGGAACTAATTCACAGACAATGGCCTGGATATTAGACGAGTATTCAAAATTCCATGGATACTCACCTGCAATTGTTACTGGAAAACCTGTTGATCTAGGTGGATCCCTTGGCAGGGATGCTGCAACTGGTAGAGGTGTTATGTTTGCAACAGAAGCTTTATTAGCTGAGTATGGTAAAAGCATCTCAGGTCAACGTTTTGTAATCCAGGGTTTTGGAAATGTCGGTTCCTGGGCAGCTGAACTTATCCATGAGAAGGGTGGAAAGATTATAGCAGTGAGTGACATTTCAGGAGCTGTAAAGAACAGCAATGGCCTTGACATTCCAGCTTTAATGAAGCACACAAAGACTAATGGTGTTGTTAAAGGATTTGAAGCAGCAGATTCAATTGATCCCAAAACCCTCTTGCTTGAAGACTGTGACGTGCTCATCCCTGCTGCTTTAGGTGGTGTTCTGAACAGGGAGAATGCTAGTGAAGTAAAGGCCAAATTCATTATAGAGGCAGCCAATCATCCCACAGATCCAGAAGCCGACGAGATTCTATACAAGAAGGGTGTTGTAGTACTACCGGACATATATGCAAATTCTGGTGGTGTGACTGTTAGCTATTTTGAGTGGGTGCAGAACATCCAAGGTTTTATGTGGGATGAGCAGAAAGTTAATACTGAGCTGAAAAACTATATGACAAGCGCTTTTCAGCATCTCAAGGAAATGTGTAAAACTCATGATTGTGATCTCCGAATGGGAGCTTTCACTCTTGGAGTCAATCGTGTTGCTCGTGCCACTCTCCTAAGAGGATGGGAAGCTTAAAATACATCCCGCTGATAAACATCAGATTCCTTTCGTCATGTCTCACAGTTCCAATAATTCAACTGGTTACTTTTCTCTGTGTCAACCACATTGTATAGCATTTTAGCCTGGTATTCTTTTGAATATTATATTGTTGCTAGCAAAATTATCAGTCTTTATGATGAGATAGTCACTGGTACCGTTCTACAAAATAATCCATTTTTTTAGTTATTGGGTACAGATTTATAGTTTTCCAACACAGTTCTTGGGGCCTAAAATAACATGCTCTATTGTTATGGGCTCTAGTTGGCTGTTTTCTGAAGGGCCACTTACATTTGAAGAAATAACGGCATGTTTTGATCCCCCCAAAAGAATTTATTGCCTACTAATTTTATCTTACTAATTGGAACATCAGAATCTTAAAAACAGGTATCAGACTCCAATTTGTTTGCAAGGATGGCAAGGCATGCTTTATATCCATAGTTCCTTTTTGAGGATTCAATTACATTTTGATGATTTATGCTCCTCTTAACTTCAAGATATGTCAGTCTGTCTTTTTATGGGTTGCTCCTCGTGTGAATGGGGTGGACACAGCTATATGTATAATCCTATTTTTAGGTTGCAGAGATTTCTTGCTGTTTTGTGTCCACAGCAACACTCTTCTCATGGTGATTTTATAGTTACACGTGTTAGATCAGTTTTGGTTACCCTTCTATGGGTTCTAGTCTTAGAAGAATCTAGAAAATGAGCCATGATTCAATCTTTGTAAGGACCTAAATCATATGTCACAGACAACATTGTGACGTGATCTCTCTGTGATTTATACTTTTCAGTTTCCGAATTCCTTTATTGTTTTCAGTTCCCTTGTATACTCCAGTTTGAACTAAAATCTAAAACATTTGCCATAATAAC

Ace file of the UniGene uagpf_v2_unigene17283

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21471	145/159
SustainPine v2.0	sp_v2.0_unigene79727	3/159

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate dehydrogenase n=4 Tax=Pinaceae RepID=D9IXC9_PINPS	-	-	100%
FL-Next	tr=Glutamate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	glutamate dehydrogenase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate dehydrogenase (NAD(P)(+)).	EC:1.4.1.3	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	94%
Blast2go	Arginine and proline metabolism	00330	94%
Blast2go	D-Glutamine and D-glutamate metabolism	00471	94%
Blast2go	Nitrogen metabolism	00910	94%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	94%
Blast2go	Metabolic pathways	01100	94%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	response to absence of light	GO:0009646	Biological Process	94%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	94%
Blast2go	response to salt stress	GO:0009651	Biological Process	94%
Blast2go	glutamate dehydrogenase [NAD(P)+] activity	GO:0004353	Molecular Function	94%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	94%
Blast2go	copper ion binding	GO:0005507	Molecular Function	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Glutamate dehydrogenase	IPR014362	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D9IXC9

Fln msg:

Fln protein: MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVANIPYGGAKGGIGCDPRSLSFSELERLTRVFTQKIHDLIGVHIDVPAPDMGTNSQTMAWILDEYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWEA*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGAGTCTCCATGGTTCAACTATAAAACGTCGTGACCTTGGCTGTCACTCAATTCTCAGCCCTCTCTGTCACCGATCAGCTGAGATTTCAAGTGAGAATTGAGCTTTGAAAAATATTTCCAGTGTGACTACTCGCTCCTACACTCTCAGGAGGGTTGCTAGCAATATTGATTTGCCCACG_-_ATGAATGCTCTGGCTGCAACAAATCGTAATTTCAAGCGAGCAGCTCGGCTTCTGGCGTTGGATTCCAAGCTTGAAAAAAGTTTGCTCATTCCTTTTCGAGAGATCAAGGTTGAGTGCACCATTCCTAAAGATGATGGAACTTTAGCCTCATATGTAGGCTTTAGGGTGCAACATGACAATGCACGGGGACCCATGAAGGGAGGGATACGCTACCATCCAGAGGTTGATCCGGATGAGGTAAATGCCTTAGCACAACTAATGACATGGAAGTCTGCTGTAGCTAACATACCATATGGGGGAGCAAAGGGTGGTATTGGTTGCGACCCACGGAGTTTAAGTTTCAGTGAGTTAGAAAGGCTTACTCGTGTCTTTACTCAGAAGATCCATGATTTGATTGGAGTCCACATAGATGTTCCAGCACCTGACATGGGAACTAATTCACAGACAATGGCCTGGATATTAGACGAGTATTCAAAATTCCATGGATACTCACCTGCAATTGTTACTGGAAAACCTGTTGATCTAGGTGGATCCCTTGGCAGGGATGCTGCAACTGGTAGAGGTGTTATGTTTGCAACAGAAGCTTTATTAGCTGAGTATGGTAAAAGCATCTCAGGTCAACGTTTTGTAATCCAGGGTTTTGGAAATGTCGGTTCCTGGGCAGCTGAACTTATCCATGAGAAGGGTGGAAAGATTATAGCAGTGAGTGACATTTCAGGAGCTGTAAAGAACAGCAATGGCCTTGACATTCCAGCTTTAATGAAGCACACAAAGACTAATGGTGTTGTTAAAGGATTTGAAGCAGCAGATTCAATTGATCCCAAAACCCTCTTGCTTGAAGACTGTGACGTGCTCATCCCTGCTGCTTTAGGTGGTGTTCTGAACAGGGAGAATGCTAGTGAAGTAAAGGCCAAATTCATTATAGAGGCAGCCAATCATCCCACAGATCCAGAAGCCGACGAGATTCTATACAAGAAGGGTGTTGTAGTACTACCGGACATATATGCAAATTCTGGTGGTGTGACTGTTAGCTATTTTGAGTGGGTGCAGAACATCCAAGGTTTTATGTGGGATGAGCAGAAAGTTAATACTGAGCTGAAAAACTATATGACAAGCGCTTTTCAGCATCTCAAGGAAATGTGTAAAACTCATGATTGTGATCTCCGAATGGGAGCTTTCACTCTTGGAGTCAATCGTGTTGCTCGTGCCACTCTCCTAAGAGGATGGGAAGCTTAA___AATACATCCCGCTGATAAACATCAGATTCCTTTCGTCATGTCTCACAGTTCCAATAATTCAACTGGTTACTTTTCTCTGTGTCAACCACATTGTATAGCATTTTAGCCTGGTATTCTTTTGAATATTATATTGTTGCTAGCAAAATTATCAGTCTTTATGATGAGATAGTCACTGGTACCGTTCTACAAAATAATCCATTTTTTTAGTTATTGGGTACAGATTTATAGTTTTCCAACACAGTTCTTGGGGCCTAAAATAACATGCTCTATTGTTATGGGCTCTAGTTGGCTGTTTTCTGAAGGGCCACTTACATTTGAAGAAATAACGGCATGTTTTGATCCCCCCAAAAGAATTTATTGCCTACTAATTTTATCTTACTAATTGGAACATCAGAATCTTAAAAACAGGTATCAGACTCCAATTTGTTTGCAAGGATGGCAAGGCATGCTTTATATCCATAGTTCCTTTTTGAGGATTCAATTACATTTTGATGATTTATGCTCCTCTTAACTTCAAGATATGTCAGTCTGTCTTTTTATGGGTTGCTCCTCGTGTGAATGGGGTGGACACAGCTATATGTATAATCCTATTTTTAGGTTGCAGAGATTTCTTGCTGTTTTGTGTCCACAGCAACACTCTTCTCATGGTGATTTTATAGTTACACGTGTTAGATCAGTTTTGGTTACCCTTCTATGGGTTCTAGTCTTAGAAGAATCTAGAAAATGAGCCATGATTCAATCTTTGTAAGGACCTAAATCATATGTCACAGACAACATTGTGACGTGATCTCTCTGTGATTTATACTTTTCAGTTTCCGAATTCCTTTATTGTTTTCAGTTCCCTTGTATACTCCAGTTTGAACTAAAATCTAAAACATTTGCCATAATAAC

Fln Alignment:

Contig17283___MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVANIPYGGAKGGIGCDPRSLSFSELERLTRVFTQKIHDLIGVHIDVPAPDMGTNSQTMAWILDEYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWEA
D9IXC9________________MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVANIPYGGAKGGIGCDPRSLSFSELERLTRVFTQKIHDLIGVHIDVPAPDMGTNSQTMAWILDEYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWEA

SNPs (tot: 123)

Position	A %	C %	G %	T %	Probability
116	83	16			0.994512
120	83			16	0.994512
123	83	16			0.994512
131			16	83	0.994512
133		16	83		0.994512
135	83	16			0.994512
136	83			16	0.994512
137	83	16			0.994512
374		88		11	0.999937
375	77	11	11		0.999842
376	88			11	0.999937
378	77		11	5	0.999842
383	88	11			0.999937
384	88			11	0.999937
387	4	80			1.0
388	80		19		1.0
390		5	78	15	1.0
392			78	21	1.0
393		15	84		1.0
484	86	13			0.999973
679	87		12		1.0
680	87			12	1.0
681	87	12			1.0
682	87		12		1.0
684	12			87	1.0
687	86			13	1.0
691	86	13			1.0
694		86	13		1.0
740		89	10		0.999919
742		10		89	0.999919
744			89	10	0.999919
745		89	10		0.999919
747		10	89		0.999919
748		10	89		0.999919
749			89	10	0.999919
750	89			10	0.999919
751			10	89	0.999919
756		89		10	0.999919
757	89	10			0.999919
761		10	89		0.999919
762	10		89		0.999919
928		18		81	0.999994
931	81	18			0.999994
932	81		18		0.999994
933	81			18	0.999994
936	81	18			0.999994
938	81			18	0.999994
939			81	18	0.999994
940		81	18		0.999994
941	81		18		0.999994
942	81	18			0.999994
945			81	18	0.999994
949		18		81	0.999994
950	18		81		0.999994
988		10		90	0.90298
1061	85		14		0.993533
1063	14	85			0.993533
1064		85		14	0.993533
1068		87		12	0.992554
1069			25	75	1.0
1070			87	12	0.992554
1072			12	87	0.992554
1073			12	87	0.992554
1074			12	87	0.992554
1075	87	12			0.992554
1076	12	12	75		0.975346
1077		25	75		1.0
1079		12	75	12	0.975346
1080	12		87		0.992554
1083		12		87	0.992554
1085		87	12		0.992554
1088	87	12			0.992554
1092		11	77	11	0.968132
1093		11	88		0.923564
1094	11		77	11	0.968132
1095	88	11			0.923564
1097	88			11	0.923564
1098	88		11		0.923564
1099	11			88	0.923564
1100		11	88		0.923564
1103	88			11	0.923564
1107	88	11			0.923564
1108	88			11	0.923564
1112	88	11			0.923564
1114		11	88		0.923564
1115			88	11	0.923564
1117	11	88			0.923564
1220		11	83		0.999887
1224		11	88		0.999937
1225		11		88	0.999937
1226			88	11	0.999937
1229	88		11		0.999937
1234		11		88	0.999937
1246			88	11	0.999952
1370		90		9	0.999842
1373	90	9			0.999842
1374		9		90	0.999842
1375			86	9	0.999642
1376			90	9	0.999842
1382			9	90	0.999842
1597	36			64	1.0
1790	80		20		0.995493
1791	80			20	0.995493
1792		12	75	12	0.975346
1793	87	12			0.992554
1794	75	12	12		0.975346
1795		12		87	0.992554
1796		14		85	0.993533
1797	14			85	0.993533
1914	83	16			0.994512
1916			83	16	0.994512
1917	83	16			0.994512
1918			16	83	0.994512
1920		83	16		0.994512
1922	83	16			0.994512
1925	83		16		0.994512
1926		83	16		0.994512
1927	83	16			0.994512
1929			16	83	0.994512
1931		16		83	0.994512
1932	16		83		0.994512
1933	83	16			0.994512
1935		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain