SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17239

Length: 990 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17239

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16411	36/44
SustainPine v2.0	sp_v2.0_unigene16829	6/44

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gly_rich multi-domain protein	-	-	1.0e-10	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	unknown [Picea sitchensis]	-	-	7.92766e-18	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
343		26		73	1.0
344	84		15		1.0
346		21	78		1.0
349			15	84	1.0
353		15	84		1.0
357		84	15		1.0
358	84		15		1.0
359	84	15			1.0
363		15		84	1.0
364	15		84		1.0
365	84	15			1.0
367	14	9	76		1.0
370		9		90	0.999872
375	9			90	0.999872
376		9		90	0.999872
377	90	9			0.999872
379	90			9	0.999872
380	90		9		0.999872
382		9		90	0.999872
384	90		9		0.999872
585	84			15	0.999986
634		16		83	0.999991
648	18	81			0.999994
651	90	10			0.90298
831		60	40		1.0
957	22			77	0.999999
968	66		33		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain