SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17220

Length: 1055 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17220

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9783	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	receptor-like protein kinase	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	69%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		69%
Blast2go	Metabolic pathways	01100		69%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	69%
Blast2go	response to water deprivation	GO:0009414	Biological Process	69%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	69%
Blast2go	starch catabolic process	GO:0005983	Biological Process	69%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	69%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	69%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	69%
Blast2go	gametophyte development	GO:0048229	Biological Process	69%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	69%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	69%
Blast2go	protein self-association	GO:0043621	Molecular Function	69%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	69%
Blast2go	cytosol	GO:0005829	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
24	66	33			0.997452
209		11		88	0.999952
394		27		72	1.0
442	90		10		0.90298
444			10	90	0.90298
446		90	10		0.90298
449		90	10		0.90298
454		90		10	0.90298
455			90	10	0.90298
456	90		10		0.90298
457		12		87	0.992554
458	12	12		75	0.975346
459	12	75	12		0.975346
460		87	12		0.992554
461		12		87	0.992554
464	85	14			0.993533
467			14	85	0.993533
468	85	14			0.993533
469			14	85	0.993533
470		85	14		0.993533
614			66	33	0.997452
620	66	33			0.997452
621	66	33			0.997452
624	66		33		0.997452
625			33	33	0.997753
626		33		66	0.997452
633	33		66		0.997452
634		33		66	0.997452
660		25		75	0.996473
662	75			25	0.996473
665	75			25	0.996473
668		25		75	0.996473
671		75		25	0.996473
672		75	25		0.996473
673	75		25		0.996473
677	50			50	1.0
679	25		25		0.995533
683		33	66		0.997452
684	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
53	65	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain