SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17173

Length: 1372 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17173

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18544	57/59
SustainPine v2.0	sp_v2.0_unigene77311	1/59

Source	Descriptions	Term	Type	Identity
AutoFact	Vesicle transport protein SFT2B, putative n=1 Tax=Ricinus communis RepID=B9RW98_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	vesicle transport protein sft2b	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport protein, SFT2-like	IPR011691	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKG0

Fln msg:

Fln protein: MNMERMSGAMGRLKSLVGMEDEEEVQEENVFLTDDISRQCSLSPQQRMYGFAACLACGLFCTLLSLIVFLRPIKFAVTFTFGNLLSLGSTAFLVGPMRQLKMMFDPVRVVASAVFLGSIAIALFCALYIHNKLLTLLAIIVEFCALIWYSLSYIPFARAAAKKFMVACFDTEF*

Protein Length: 175

Fln nts: CGTCGTGATCTTGGGTGTCACTGTAAATGTGATTATGGTTTGGTTTTGCTCGTTCTGCCTTCGCATTCTGAAAGGAGAGAATAATGGAATTGTTTTCTTAGCGTGCCAGGGTAAGCAGGCGCCGGTGGAAATGGAAAAATAAAATAATACGTACAGGGGAAAAGGTGAAAATTTAGGCAAACTTGTATTCCGATTTGATATATTGAATGAATTTGCTGTGAGAGAAAATATCGAATGAATGAATTGGGTTTTTGAAGATCAAGCAAAGAAACCGAAAACATCAAAGGCAAACAGGCAGGCAGCCTGACACC_-_ATGAACATGGAAAGGATGAGCGGAGCCATGGGAAGACTGAAATCCCTCGTTGGAATGGAAGATGAGGAAGAAGTTCAGGAGGAAAACGTCTTTTTAACCGATGATATTTCTCGTCAATGTTCCTTATCTCCTCAGCAGAGAATGTATGGATTTGCAGCTTGCCTGGCCTGTGGCCTATTTTGTACACTCCTGTCGTTAATTGTATTCCTCAGGCCTATTAAGTTTGCTGTCACATTCACGTTCGGCAATCTGCTTTCATTAGGAAGCACAGCTTTTCTTGTAGGACCCATGCGACAACTGAAGATGATGTTTGATCCTGTACGCGTTGTGGCATCGGCTGTGTTTCTTGGTAGCATCGCTATTGCTTTGTTTTGTGCACTATATATTCATAATAAACTTCTGACACTCTTAGCAATTATCGTGGAATTTTGTGCACTTATCTGGTATAGCTTGAGCTATATACCTTTTGCACGAGCAGCAGCTAAAAAATTCATGGTTGCTTGCTTTGACACGGAGTTTTAG___ACTGGGACTCTCAGATTGACGGTGAAGAAAACCTGTAGATTACATGCCTTATTATCTATTCTAATATGTTTTCAAGTGGGCTGTACTGGTGAATTTTGAAAGAGGCATTTGATTTGAGTTCTGTATAGGATGTACACATGCATCTATCTGATGAAAATGTGCTTGTCATCATCAGAGATACAGGTCCGGAATGTGTGCTTTGTTGATAGTTAGACATTGAGATTCAATTTTTGTGTGGACTATATCTAAATTGGACCCTCTGAAGTGGAAGCCTTACATCTGTACTCACCTGTTGGGGATTGTGAACTTGTCCTCTATATCTAGCAATTCTTTCTTTTCTTTCCAAGTGTTGGTGCCCAGTCTTTGATAATACAAAATCAGTTCAATAAAGCGGGCAGACTTGTGGCATGCTTAAGCCTCTGTTCAATTGTTCTAGGTTTAAATGCCCAAGTTTCATTTGAGTATAGATATTAGTTTATAAATGGTCCTAAAATTGTTAAAATGCTTCTCACTAATAGAAAATTTGAGTTCAATAAGTT

Fln Alignment:

Contig17173___MNMERMSGAMGRLKSLVGMXXXXXXXXX-NVFLTDDISRQCSLSPQQRMYGFAACLACGLFCTLLSLIVFLRPIKFAVTFTFGNLLSLGSTAFLVGPMRQLKMMFDPVRVVASAVFLGSIAIALFCALYIHNKLLTLLAIIVEFCALIWYSLSYIPFARAAAKKFMVACFDTEF
A9NKG0________________MYMERMSGAMGRLKSLVGMEEEEEAQEEENIFLTDDLSRQCSLSPQQRMYGFAACLACGLFCTLLSLLVFLHPIKFAVTFTFGNLLSLGSTAFLVGPMRQLKMMFDPVRVVASAVFIGSMAIALFCALYIHSKLLTLLAIIIEFCALIWYSLSYIPFARAAAKKFMGSCFEAEF

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
682	57	42			1.0
683			42	57	1.0
687		42		57	1.0
692			42	57	1.0
693		42		57	1.0
702	57	42			1.0
703	42			57	1.0
814	85		15		1.0
816		15	85		1.0
819	10			90	0.999898
820		10	90		0.999898
826			10	90	0.999898
827		10		90	0.999898
830	90			10	0.999898
834			88	11	0.999937
835		11	88		0.999937
945		7	92		0.999532
946	92			7	0.999532
948			92	7	0.999532
952		7		92	0.999532
954		7	92		0.999532
1026		2	91		0.99441
1027		5	94		0.998578

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain