SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17172

Length: 1707 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17172

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16844	32/37

Source	Descriptions	Term	Type	Identity
AutoFact	succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	succinyl- ligase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Succinate--CoA ligase (ADP-forming).	EC:6.2.1.5	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	89%
Blast2go	Propanoate metabolism	00640	89%
Blast2go	C5-Branched dibasic acid metabolism	00660	89%
Blast2go	Carbon fixation pathways in prokaryotes	00720	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	succinyl-CoA metabolic process	GO:0006104	Biological Process	89%
Blast2go	succinate metabolic process	GO:0006105	Biological Process	89%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	succinate-CoA ligase (ADP-forming) activity	GO:0004775	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, succinyl-CoA synthetase-type	IPR013650	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase	IPR005811	-	-
Sma3	Succinyl-CoA synthetase, beta subunit, conserved site	IPR017866	-	-
Sma3	Succinyl-CoA synthetase, beta subunit	IPR005809	-	-
Sma3	Succinyl-CoA synthetase-like	IPR016102	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F9

Fln msg:

Fln protein: MARGLAGRLLTRAVTAIRSGQSWQQQQVRHLNIHEYQGSSLMSKYGVNVPKGIVVSSVAEVRQAIKDAFPEEKEVVVKSQILAGGRGLGTFKNGFEGGVHIAKIDEVEDIAGKMLGQILVTRQTGPGGKPVNKVYICQKLSLANEMYFAITLDRVSAGPVIISCRKGGTSIEDLAEKYPDMIIKVPIDIFEGITDEDAAKVVEGLAPTLADRDASIDQVKKLYGLFCETDCTLLEINPIAETVDGQLVAADAKLNFDDNAAYRQKEIFAFRDKSQEDPREVSAAEADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDIIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGMTLITAENLDDAAEHAVIAAMR*

Protein Length: 427

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGGTCGAGAGGTTTTCTATATTTATACCCGGAGTCCTCAGTGACTAGTTTGATTACCTCCCTACGCCTCCCTGTCTAACGTTGCATTGCAGAGAGAGGCCTTCATAGGTCTGGGAATCCATTACATCTGTGTTTAAAAGAGCAGAAGAGAGAAA_-_ATGGCGAGAGGCTTGGCGGGTCGGCTGCTTACCAGGGCTGTTACAGCAATCAGATCGGGGCAATCGTGGCAGCAGCAGCAAGTCCGACATCTCAATATCCACGAATACCAGGGTTCAAGTCTGATGAGCAAATATGGAGTTAATGTTCCCAAAGGTATTGTTGTCTCTTCAGTTGCAGAAGTGAGGCAGGCCATCAAAGACGCGTTTCCTGAAGAGAAAGAGGTTGTTGTGAAAAGTCAAATACTTGCTGGTGGTCGAGGATTGGGAACATTTAAAAATGGGTTTGAAGGGGGTGTTCATATTGCCAAAATTGATGAAGTGGAGGACATTGCAGGGAAGATGCTAGGACAAATTCTTGTAACCAGACAGACTGGACCTGGAGGGAAACCGGTGAACAAGGTGTACATATGCCAGAAGTTGTCTCTCGCTAATGAAATGTACTTTGCCATTACCCTTGACCGTGTGTCTGCTGGTCCTGTTATAATTTCATGCAGAAAGGGTGGCACCAGTATTGAAGACCTTGCAGAAAAGTATCCTGACATGATAATCAAGGTTCCTATTGATATTTTCGAAGGAATAACAGATGAAGATGCTGCAAAAGTTGTCGAAGGTCTGGCCCCCACACTTGCTGATAGAGATGCATCAATAGATCAAGTAAAAAAGCTGTATGGTCTATTCTGTGAAACAGACTGTACACTTCTTGAGATCAATCCGATTGCAGAGACTGTTGATGGCCAATTAGTGGCTGCTGATGCAAAACTCAATTTTGATGACAATGCTGCGTATCGCCAGAAAGAGATTTTTGCTTTCCGTGATAAATCTCAAGAGGATCCAAGAGAGGTTTCTGCTGCTGAGGCTGACTTGAACTATATTGGATTGGATGGAGAAATAGGATGCATGGTTAATGGTGCAGGGTTGGCAATGGCAACCATGGATATCATAAAATTACATGGGGGAACTCCTGCCAATTTTCTTGATGTTGGAGGAAATGCTTCTGAAGGGCAGGTGGTGGAAGCATTTAAAATTTTGACTTCTGATGAAAAGGTCAAAGCAATTCTAGTCAACATTTTTGGAGGCATTATGAAATGTGATATCATTGCAAGTGGAATTGTAAATGCTGCAAAACAGGTTCAATTGAAGGTCCCTGTGGTGGTTCGTTTGGAAGGGACAAACGTTGATTTGGGTAAAAGCATTCTTAAGGAAAGTGGAATGACCTTGATTACTGCTGAAAACCTGGATGATGCAGCTGAACATGCTGTCATTGCAGCAATGAGATAA___ACGAGTTGTAGCTGTTTCTATTATAGGAAGTTTTCATTTTATAATAAGCTGAGTATGGAATTACTGTGACAATTTTGACCATACCTTAAACTGGAGATCAATGTTACTATCATATTGGGGATTCCGATTGAAGAAGTGAAGGTAAGAGAGTTCTTCAGTTTTATTATTTAAACTTTCAAGCTATTTTTTTACGAAATCGATTTCACCCCAAGGCATTGGGTAACCACTGTTTGCCTGTGAGTAAGATAG

Fln Alignment:

Contig17172___MARGLAGRLLTRAVTAIRSGQSWQQQQVRHLNIHEYQGSSLMSKYGVNVPKGIVVSSVAEVRQAIKDAFPEEKEVVVKSQILAGGRGLGTFKNGFEGGVHIAKIDEVEDIAGKMLGQILVTRQTGPGGKPVNKVYICQKLSLANEMYFAITLDRVSAGPVIISCRKGGTSIEDLAEKYPDMIIKVPIDIFEGITDEDAAKVVEGLAPTLADRDASIDQVKKLYGLFCETDCTLLEINPIAETVDGQLVAADAKLNFDDNAAYRQKEIFAFRDKSQEDPREVSAAEADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDIIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGMTLITAENLDDAAEHAVIAAMR
D5A8F9________________MVRGSATRLLTRAVTAVRSGQSWQQQQVRHLNIHEYQGASLMSKYGVNVPKGIVVSSVAEVKQAIRDAFPGEKEVVVKSQVLAGGRGLGTFKNGFEGGVHIAKIDEAEDIAAKMLGQILITRQTGPEGKPVNKVYICQKLSLANEMYFAITLDRVSAGPVIISCSKGGTSIEDLAEKYPDMIIKVPIDIFKGITDEDAAKVVEGLAPRLADRDASIDQIKKLYGLFRETDCTLLEINPIAETVDGQLVAADAKMNFDDNAAYRQKDIFSFRDKSQEDPREVSAAEADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGLALITAENLDDAAGNAVIAAAK

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
63	46			53	1.0
375	10	90			0.90298
376	90	10			0.90298
429		25		75	0.996473
433		14	85		0.993533
438	75			25	0.996473
440	25		75		0.996473
441	75	25			0.996473
442		25		75	0.996473
444			75	25	0.996473
450	60		20	20	0.99255
451			20	80	0.995493
453			20	80	0.995493
454		20		80	0.995493
455	80		20		0.995493
456	80	20			0.995493
457	60	20		20	0.99255
458	60	40			1.0
459	80			20	0.995493
463		20	80		0.995493
465			20	80	0.995493
467		20	80		0.995493
471		20	80		0.995493
472			80	20	0.995493
473		20	80		0.995493
474	20		80		0.995493
542	80			20	0.995493
546	83	16			0.994512
548	83			16	0.994512
550	83			16	0.994512
555			83	16	0.994512
558		83	16		0.994512
562		16	83		0.994512
564		16	83		0.994512
565	16		83		0.994512
566	16		83		0.994512
1064		25	75		0.996473
1065	75		25		0.996473
1067		25	75		0.996473
1069	80			20	0.995493
1072	80	20			0.995493
1073	80	20			0.995493
1075	80			20	0.995493
1078	80	20			0.995493
1086		20	80		0.995493
1087	20		80		0.995493
1462		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
249	260	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain