SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17144

Length: 1759 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17144

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7201	73/90
SustainPine v2.0	sp_v2.0_unigene16604	12/90

Source	Descriptions	Term	Type	Identity
AutoFact	putative aminotransferase [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	aminotransferase -like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		89%
Blast2go	Cysteine and methionine metabolism	00270		89%
Blast2go	Arginine and proline metabolism	00330		89%
Blast2go	Tyrosine metabolism	00350		89%
Blast2go	Phenylalanine metabolism	00360		89%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400		89%
Blast2go	Carbon fixation in photosynthetic organisms	00710		89%
Blast2go	Isoquinoline alkaloid biosynthesis	00950		89%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		89%
Blast2go	Biosynthesis of phenylpropanoids	01061		89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		89%
Blast2go	Biosynthesis of plant hormones	01070		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Biosynthesis of secondary metabolites	01110		89%
Blast2go	1-aminocyclopropane-1-carboxylate synthase.	EC:4.4.1.14	-	89%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate biosynthetic process	GO:0042218	Biological Process	89%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	89%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	89%
Blast2go	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	89%
Blast2go	plastid	GO:0009536	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMH5

Fln msg:

Fln protein: MTILPKFLLKAFRFGQMPSRGVALKESIIPSPPSALYEGLKHKPHNCRLNKPWVHTIMASSVSTASSEQVAVKAQEPPPLQVARRLEKFKTTIFTQMSILALKHGAINLGQGFPNFDGPEFVKEAAIQAIREGKNQYARGYGVPQLNSAVAARFKKDTGLTVDPEKEVTVTSGCTEAIAATMLGLINPGDEVIIFSPFYDSYQATLSMSDAKIKTVTLRPPDFAVPEKELREVFSENTRAILINTPHNPTGKMFSRKELELIASLCIENDALAFTDEVYDKLAFEAEHISMASLPGMYERTVTMNSLGKTFSVTGWKIGWAIAPPHLSWGVRQAHSYLTFSTSTPMQWASVAALQAPDSYYEELLKDYGAKKKILVDGLKTVGFKVYDSPGTYFVVVDHTPFGFDNDIAFCEYLIEKVGVVAIPTSVFYIDPNEGKNLVRFTFAKDEDTLKQAIERMKANLKR*

Protein Length: 465

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTCCTAGTATTCC_-_ATGACCATCTTGCCGAAGTTCCTGTTAAAAGCATTCAGATTTGGACAGATGCCGTCCAGGGGGGTTGCACTTAAGGAGTCTATTATCCCTTCTCCGCCCTCAGCACTCTATGAAGGCCTCAAACACAAGCCACACAACTGCAGACTGAACAAACCTTGGGTTCACACAATCATGGCTTCTTCTGTATCTACTGCTAGCAGCGAGCAAGTGGCAGTCAAGGCCCAAGAGCCCCCTCCATTGCAGGTTGCCCGTCGCTTGGAGAAATTCAAGACTACAATCTTTACACAGATGAGCATCCTGGCTCTGAAACATGGGGCTATTAATCTTGGGCAAGGCTTTCCAAACTTTGATGGCCCTGAATTTGTTAAGGAGGCTGCCATTCAGGCAATAAGGGAAGGGAAAAACCAATATGCAAGGGGTTATGGTGTTCCACAGCTAAATTCTGCCGTGGCTGCGCGATTCAAAAAGGACACAGGTTTGACAGTTGATCCAGAGAAGGAAGTAACAGTCACTTCTGGCTGCACAGAAGCCATAGCTGCAACTATGCTGGGTTTAATCAATCCTGGGGATGAAGTGATCATATTTTCTCCTTTCTATGACTCATATCAGGCAACATTATCTATGTCAGATGCAAAAATTAAGACTGTCACATTACGGCCACCCGACTTTGCTGTTCCAGAAAAAGAGCTGAGAGAGGTCTTCTCGGAGAACACTCGAGCCATTCTCATCAACACCCCACACAACCCCACTGGAAAAATGTTTTCTCGAAAGGAGCTAGAACTTATAGCTTCCCTTTGCATTGAGAATGATGCCTTGGCCTTCACCGATGAGGTCTATGATAAGCTAGCATTTGAGGCAGAGCACATTTCCATGGCTTCCCTTCCAGGGATGTATGAGAGAACTGTCACAATGAATTCGTTGGGAAAGACATTTTCTGTAACAGGCTGGAAGATTGGTTGGGCTATTGCACCACCTCACCTGTCGTGGGGAGTGAGGCAAGCTCATTCATATCTGACCTTTTCAACATCAACCCCCATGCAATGGGCATCTGTTGCTGCTCTACAGGCCCCAGACTCCTATTATGAGGAACTATTGAAAGACTACGGGGCTAAGAAGAAAATTTTGGTGGATGGTCTGAAAACTGTGGGTTTCAAGGTCTATGATTCACCAGGCACTTACTTTGTAGTGGTTGATCACACTCCATTTGGATTTGACAATGATATTGCATTTTGTGAGTATCTTATAGAAAAAGTAGGTGTTGTTGCCATACCGACAAGTGTCTTCTACATAGACCCAAATGAGGGTAAAAACCTGGTGAGATTTACCTTTGCCAAAGATGAGGATACTTTGAAGCAGGCTATTGAAAGGATGAAAGCAAATTTGAAGCGATGA___TTGCTTAATCTGTGTTGCCTGCTGAACATTTGCACGTGTGAATTTTACCTTTTATATTGATTGGAAGTTTGGAACTCTTAAATTAAACGGCCTAGTTGGCTATCCATGGTTCATGGTAAGATTTGTTTCTTTTCATTTTGTTTAATGCAATCTGCTTCTGGGATAGTAAAACTAGGAATTCCAAGTTAAAGCTTAATTTGACTTTCCTGCTGGTTAAGTAGAGAATCATATAGTGGTGCAACATTGGATATTGTTTATGAAGCATTCAGTAACTCTGTGGCCCCATGGAAAAAGAAAAACAGCTCTTGCAGCACAGATTAGAGTTGG

Fln Alignment:

Contig17144___MPSRGVALKESIIPSPPSALYEGLKHKPHNCRLNKPWVHTIMASSVSTASSEQVAVKAQEPPPLQVARRLEKFKTTIFTQMSILALKHGAINLGQGFPNFDGPEFVKEAAIQAIREGKNQYARGYGVPQLNSAVAARFKKDTGLTVDPEKEVTVTSGCTEAIAATMLGLINPGDEVIIFSPFYDSYQATLSMSDAKIKTVTLRPPDFAVPEKELREVFSENTRAILINTPHNPTGKMFSRKELELIASLCIENDALAFTDEVYDKLAFEAEHISMASLPGMYERTVTMNSLGKTFSVTGWKIGWAIAPPHLSWGVRQAHSYLTFSTSTPMQWASVAALQAPDSYYEELLKDYGAKKKILVDGLKTVGFKVYDSPGTYFVVVDHTPFGFDNDIAFCEYLIEKVGVVAIPTSVFYIDPNEGKNLVRFTFAKDEDTLKQAIERMKANLKR
B8LMH5________________MQSRGVALREAIISSPALPFSEGLKPKPHICKLNKPWVRTIMASAVSTANSEQVAVKAQEPPPLQVSRRLEKFKTTIFTQMSILAVKHGAVNLGQGFPNFDGPEFVKEAAIKAIREGKNQYARGYGVPELNSAVAARFKKDTGLTVDPEKEVTVTSGCTEAIAATMLGLINPGDEVIIFSPFYDSYQATLSMSDAKIKTVTLRPPDFAVPEKELREVFSENTRAILINTPHNPTGKMFSQKELELIASLCIENDALAFTDEVYDKLAFEAEHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLSWGVRQAHSYLTFSTSTPMQWASVAALQAPDSYYEELLKDYRAKKNILVDGLKTVGFKVYDSPGTYFVVVDHTPFGFDNDIAFCEHLIEKVGVVAIPTSVFYVDPNEGKNLVRFTFAKDEDTLKQAIERMKANLKR

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
93	25	75			0.996473
94		25	75		0.996473
97	25	75			0.996473
141		80		20	0.995493
142	80		20		0.995493
204	66		33		1.0
344		61		38	1.0
347	77		11		0.968132
348	88		11		0.923564
349	88	11			0.923564
350		88		11	0.923564
351	88		11		0.923564
353		11	88		0.923564
354	11		88		0.923564
355		11	88		0.923564
356			88	11	0.923564
621		10		90	0.90298
622	90		10		0.90298
624		10		90	0.90298
625			10	90	0.90298
627		90	10		0.90298
628	10			90	0.90298
633			10	90	0.90298
636	90		10		0.90298
638		10	90		0.90298
674	80		20		1.0
675	80			20	1.0
676	80		20		1.0
678	46	23			1.0
679		23		76	1.0
682	68	10		21	1.0
684	68		21	10	1.0
689		89	10		0.999919
692	89	10			0.999919
695	84		15		1.0
697			89	10	0.999919
699		89		10	0.999919
703		89		10	0.999919
705	10		89		0.999919
927		9	90		0.999842
1013	64		35		1.0
1040	77			22	1.0
1046		16		83	1.0
1074		88	11		0.999952
1075		88		11	0.999952
1077	88		11		0.999952
1081	82	11	5		0.999919
1082	82	5		11	0.999919
1086		12	87		0.999964
1087		87		12	0.999964
1088	87		12		0.999964
1092	12		87		0.999964
1093		12		87	0.999964
1095		12	87		0.999964
1096	12	87			0.999964
1221			8	91	0.999766
1223		8		91	0.999766
1228	8			91	0.999766
1229		8	91		0.999766
1230		8	91		0.999766
1234	91	8			0.999766
1236		91	8		0.999766
1237	91			8	0.999766
1558	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain