SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17118

Length: 314 nt

UniGene Fasta

>uagpf_v2_unigene17118
CGTCGTGACCTTGGCTGTCACTCAATTGTTGGTACTTTCTTTGGTGTGGAAACTCTATCAGGTGTCCTTGCTGGTGCTCTTGTATCTGGTGTGCAGGTAACTGTTGCTCTAGGTGTTAATACTTTTATTTCTGTCTGTATACACATCTCCCTAACCATGTGTAATCAACTGGATATCAGGTTGCTATTTCTGCTTCCAACACTGGTGGTGCTTGGGACAATGCTAAGAAGTATATTGAGGCTGGTGCATCAGAGCATGCCAGGACCCTTGGTCCAAAAGGGTCCGATCCCCACAAAGCTGCTGTCATTGGTGAC

Ace file of the UniGene uagpf_v2_unigene17118

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23459	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPase [Hevea brasiliensis]	-	-	6.0e-29	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	pyrophosphate-energized vacuolar membrane proton	-	-	2.06788e-28	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	2.06788e-28	96%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Prephenate dehydrogenase	IPR003099	-	-
Sma3	Pyrophosphate-energised proton pump	IPR004131	-	-
Sma3	NADP oxidoreductase, coenzyme F420-dependent	IPR004455	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQU4

Fln msg: Separated hits, possible frame ERROR between 108 and 168, Distance to subject end: 42 aas, your sequence is shorter than subject: 105 - 765

Fln protein: RRDLGCHSIVGTFFGVETLSGVLAGALVSGVQVTVxxxxxxxxxxxxxxxxxxxxxTGYQVAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGD

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTGGTACTTTCTTTGGTGTGGAAACTCTATCAGGTGTCCTTGCTGGTGCTCTTGTATCTGGTGTGCAGGTAACTGTTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAACTGGATATCAGGTTGCTATTTCTGCTTCCAACACTGGTGGTGCTTGGGACAATGCTAAGAAGTATATTGAGGCTGGTGCATCAGAGCATGCCAGGACCCTTGGTCCAAAAGGGTCCGATCCCCACAAAGCTGCTGTCATTGGTGAC

Fln Alignment:

Contig17118___IVGTFFGVETLSGVLAGALVSGVQVTVAxxxxxxxxxxxxxxxxxxxxTGYQVAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGD
B8LQU4________________IVGTLFGVETLSGVLAGSLVSGVQVAISxxxxxxxxxxxxxxxxxxxxSGVQVAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVIGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain