SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17046

Length: 1127 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene17046

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17087	11/24
SustainPine v2.0	sp_v2.0_unigene32455	12/24

Source	Descriptions	Term	Type	Identity
AutoFact	putative thaumatin-like protein [Trifolium pratense]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	thaumatin-like protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin D	IPR015451	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU8

Fln msg: STOP codon was not found. Distance to subject end: 3 aas,

Fln protein: MAIHKFFLLLLLALLNRAWATSFIIANNCKYNVWPGFLSNPGKTPLSTTGFQLLPGQTQTVGIPAGWAGRLWGRSGCTFDSTGKGNCSTADCGGSLECNGAGAIPPASLAEFSIGQGQAQDFYDVSLVDGYNLPLLITAQGGTGACTSTGCITDINLSCPKVLQVDDGVGGTDVMACKSACAAFGDPAYCCSGAYGNPNTCKPSAYSQLFKTQCPRAYSYAYDDTTSTFTCTGADYTITFCPTLF

Protein Length: 246

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCCTTATAAGAATACGTTGTGATTTGGCTGTCACCCATTGAAAATAGTGTGCCAAGCAGAAACTGGACCATTGAATCCCTCTGTGCACACCTGTAAATCTCTGACATTCTTGTTTTTCTTTTGACGCTTTCATATGCTTTCTTTCCTCTTGGTCCCAGGCTTTCATGTGCGTTTTTGCTGTAGTAATTGACAGATAGATACCAATCGAGCTTTCAGTGATACTTTTGTATTTCCATTCTGACAAAGTTTGTACCTTCTTTATCACATTGTATTAAATACACACCCACCCTGTTCGAGGGAAAATATCATTGAACTTTTAAAGATCTGTGATCAAGGGGAGTGTAGCCTGTGTAGGTGTATTC_-_ATGGCTATTCACAAGTTCTTCCTCCTGCTGTTGTTAGCACTCTTAAACAGAGCTTGGGCAACATCTTTCATTATTGCAAACAATTGCAAATACAACGTGTGGCCTGGGTTTCTCTCTAATCCAGGCAAAACTCCCCTGTCTACCACCGGTTTCCAGCTTCTTCCAGGCCAGACACAAACCGTTGGCATACCTGCAGGTTGGGCCGGGCGTCTCTGGGGACGCAGCGGTTGCACCTTTGATTCTACAGGTAAGGGCAACTGCTCCACTGCTGACTGTGGCGGTTCCCTTGAATGCAATGGTGCAGGGGCGATACCTCCCGCTTCCCTTGCAGAGTTCTCAATTGGGCAAGGCCAAGCCCAGGATTTCTATGACGTGAGCCTTGTTGATGGCTACAATCTTCCTCTGCTGATCACAGCTCAAGGGGGCACTGGTGCTTGCACCTCAACAGGTTGCATCACGGATATCAATCTCAGCTGCCCTAAGGTGCTACAGGTCGATGATGGTGTTGGAGGTACTGACGTTATGGCCTGCAAGAGCGCCTGTGCTGCCTTTGGAGATCCTGCATATTGCTGCAGTGGGGCATATGGGAATCCCAATACCTGCAAGCCAAGTGCTTACTCTCAGCTCTTCAAGACACAATGCCCCAGAGCCTACAGCTATGCCTATGATGATACCACTAGCACCTTCACGTGTACAGGTGCTGACTACACCATTACCTTCTGTCCTACCCTCTTCGC

Fln Alignment:

Contig17046___WATSFIIANNCKYNVWPGFLSNPGKTPLSTTGFQLLPGQTQTVGIPAGWAGRLWGRSGCTFDSTGKGNCSTADCGGSLECNGAGAIPPASLAEFSIGQGQAQDFYDVSLVDGYNLPLLITAQGGTGACTSTGCITDINLSCPKVLQVDDGVGGTDVMACKSACAAFGDPAYCCSGAYGNPNTCKPSAYSQLFKTQCPRAYSYAYDDTTSTFTCTGADYTITFCP
A9NYU8________________FATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPLQAMSIVPPAGWSGRIWGRHGCSFDSDGKGLCATGDCGGQLHCNGAGGAPPATLAEITLG---TQDFYDVSLVDGYNLPIAIAPRRGSGKCTYAGCISDLNLSCPPSLQVKNEQG--CVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPNSLVTCSGADYLITFCP

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
165	85		14		0.999981
177	7			38	1.0
323		90		10	0.90298
325		88	11		0.923564
328	11			88	0.923564
329		11		88	0.923564
331			88	11	0.923564
332	55		33	11	1.0
336	55		33	11	1.0
337	88	11			0.923564
339	88	11			0.923564
358		18	81		0.999994
361		90	10		0.90298
363		10	90		0.90298
369	90	10			0.90298
371			80	20	0.999996
372		10	90		0.90298
373	10		90		0.90298
374		10	90		0.90298
378		10	90		0.90298
379	10			90	0.90298
380	90	10			0.90298
381			90	10	0.90298
383	10	90			0.90298
461	87		12		0.992554
465			12	87	0.992554
466	12			87	0.992554
468	87	12			0.992554
471	87		12		0.992554
472		12		87	0.992554
477	85	14			0.993533
478	85			14	0.993533
480	75	12			0.975346
481	87		12		0.992554
483		20		80	0.999996
485		80		20	0.999996
487	90		10		0.90298
490	90			10	0.90298
491		90		10	0.90298
492	70	10	20		0.999998
494		90		10	0.90298
496			10	90	0.90298
497		11	77	11	0.968132
499		22	77		0.999999
500	11		77	11	0.968132
504	12			87	0.992554
505		12	87		0.992554
506	12		87		0.992554
623		42	57		1.0
645	60			40	1.0
829		33	66		0.997452
834			33	66	0.997452
842		66		33	0.997452
843	66		33		0.997452
844	66		33		0.997452
846	66			33	0.997452
850	33		66		0.997452
851		33		66	0.997452
853		33	66		0.997452
854	33	66			0.997452
989	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain