SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene17021

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene17021
CGTCGTGACCTTGGCTGTCACTCAGTCCTGAGGAGTTGGCTACAGCTACTCAAGTTCAAGGAGTGTATTTGGTGATCTGGCTGTCACTCCATCGGTTGAAATTATCAAGGTTACAGATGAAATGAAAAACTTTAAAGCATATGCTAAATTGCGTGTCGAAAGAATGAACAAGCGATTGGTAGGAGTTCGGATGAAGAAGGCTGCAGAGGCAGAAAAAGATGAGAAAAAGTAGATGTCCGTTGTGCAAGCAGTGTCAGAGATATTTCTTAAGTTTTGAGCGCCCTTTGTTCGTGTTTTTAATCTTCAGATGAGAAATGCAGTTTGTGCTGCATAGAAAGCCAGCGAACAAGAACCTTAAGGACTTTCGTTAGCAGTCGTAGGATGCATTAC

Ace file of the UniGene uagpf_v2_unigene17021 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60887	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L13 n=4 Tax=Picea RepID=A9NTR4_PICSI	-	-	87%
FL-Next	sp=60S ribosomal protein L13; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	60s ribosomal protein l13	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13e	IPR001380	-	0.0	-
Sma3	Ribosomal protein L13e, conserved site	IPR018256	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTR4

Fln msg: Separated hits, possible frame ERROR between 77 and 89, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 77 - 209

Fln protein: S*PWLSLSPEELATATQVQGVYLVxxxxxPSVEIIKVTDEMKNFKAYAKLRVERMNKRLVGVRMKKAAEAEKDEKK*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCCTGAGGAGTTGGCTACAGCTACTCAAGTTCAAGGAGTGTATTTGGTGATxxxxxxxxxxxxTCCATCGGTTGAAATTATCAAGGTTACAGATGAAATGAAAAACTTTAAAGCATATGCTAAATTGCGTGTCGAAAGAATGAACAAGCGATTGGTAGGAGTTCGGATGAAGAAGGCTGCAGAGGCAGAAAAAGATGAGAAAAAGTAGATGTCCGTTGTGCAAGCAGTGTCAGAGATATTTCTTAAGTTTTGAGCGCCCTTTGTTCGTGTTTTTAATCTTCAGATGAGAAATGCAGTTTGTGCTGCATAGAAAGCCAGCGAACAAGAACCTTAAGGACTTTCGTTAGCAGTCGTAGGATGCATTAC

Fln Alignment:

Contig17021___SPEELATATQVQGVYLVIxxxxPSVEIIKVTDEMKNFKAYAKLRVERMNKRLVGVRM
A9NTR4________________SKEELATATQIQGTYMPIxxxxPSVEIIKVTDEMKNFKAYAKLRVERMNKRLVGVRM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain