SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16999

Length: 690 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16999

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17371	5/18
SustainPine v2.0	sp_v2.0_unigene29489	10/18

Source	Descriptions	Term	Type	Identity
AutoFact	peptidylprolyl isomerase [Arabidopsis thaliana] dbj\|BAB10690.1\| peptidylprolyl isomerase [Arabidopsis thaliana] gb\|AED95689.1\| peptidylprolyl isomerase [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	peptidylprolyl isomerase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	response to heat	GO:0009408	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	vacuole	GO:0005773	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3		IPR017909	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
68	66	33			0.997452
70	66			33	0.997452
72			33	66	0.997452
74		66	33		0.997452
76	66	33			0.997452
77		33	66		0.997452
78	66			33	0.997452
79	66			33	0.997452
80	66		33		0.997452
83	66			33	0.997452
86		33		66	0.997452
88	66	33			0.997452
89	66			33	0.997452
91	33			66	0.997452
136		14		85	0.993533
139	85	14			0.993533
140			14	85	0.993533
141	85			14	0.993533
144	85	14			0.993533
145		14	85		0.993533
146	85			14	0.993533
147			85	14	0.993533
148		85	14		0.993533
149	85		14		0.993533
151	85			14	0.993533
152	85		14		0.993533
153			85	14	0.993533
156		14		85	0.993533
157	85			14	0.993533
234		10	90		0.90298
236		10	90		0.90298
237	10	90			0.90298
270	88			11	0.923564
314		88		11	0.923564
319	88		11		0.923564
322	11			88	0.923564
332	87		12		0.992554
339	14			85	0.993533
383			33	66	0.997452
523			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain