SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16966

Length: 2778 nt

UniGene Fasta

>uagpf_v2_unigene16966
CGTCGTGACCTTGGCTGTCACTCAAACCGTAGCAATACAGATACAAGACACCGTCGTGACCTTGGCTGTCACTCAAGATCTGTTTAGAAATTCTATCGACCTTTCTGCCAGAAGCAGCGGGCTTCCTCTCTCTTCTCAGGGAACTGCGGAGTCGGGGAGAGGCCGACTGATTTCTCTTGCTTTCGGGCTGATTGAAATCTGTCCCTCTTTAATGGAGTGCCGGCCGTGGGCATACACGATCTCGATCTGAAGAGTGATTGGGTTATTTGATTTATTTGATTCAGCTCAAGATTTTGGCGAGGAGGCGATCTTGGGATACCTAGTGGCACTGCCATGGATAATTTAATAACTCTGGTAAACAAGATACAGAGGGCCTGCACCGCGCTCGGTGACCATGGAGAAGAGAACGCTTTGCCGACTCTCTGGGATGCCCTTCCCTCCATAGCCGTCGTGGGAGGACAGAGCTCCGGGAAATCCTCTGTGCTGGAGAGCATCGTTGGAAGGGATTTTTTACCGCGTGGATCAGGTATTGTTACTAGACGGCCGCTTGTCCTTCAACTTCACAAGACTGATGAAGGCAGCAGGGACTACGCCGAGTTCCTTCACCAACCCAGAAAGAAATACACCGACTTTGCACTGGTAAGGAAGGAAATTGCGGATGAGACTGATCGAATTACAGGGCGTTCCAAGCAAGTCTCAAGTGTCCCAATTCACCTTAGTATTTTTTCACCCAATGTTGTAAATTTGACTCTAATTGATCTCCCTGGGTTGACAAAAGTGGCTATTGACGGTCAACCTGAAAGTGTTGTTGCTGATATTGAGAACATGGTTCGCTCTTTCATTGAGAAGCCAAATTCATTAATTTTAGCTATTTCTCCTGCAAATCAAGATCTTGCCACCTCTGATGCCATCAAGATATCTCGAGAGGTAGATCCTAAAGGAGAGAGAACTTTTGGAGTCTTGACAAAGGTAGATCTGATGGATAAGGGAACCAATGCTGTGGATATTTTGGAAGGAAAAGCATATCGTTTGCAGTTTCCTTGGGTTGGTGTTGTGAATCGCTCTCAAGCAGATATCAACAAAAGTGTTGACATGGTTGTTGCAAGACGAAGAGAGCGGGAATATTTTTCAAATAATCCAGACTATAAACATATAGCACACAGAATGGGATCAGAACATCTTGCAAAGATGCTTTCAAAGCATCTTGAAACTGTAATTAAGTCACGCATCCCAAGCCTTCAGTCACTTATCAACAAAACTATTGCTGATATTGAAACAGAGTTGAGTCGACTTGGAAAGCCGATTGCTTCTGATGCTGGAGGACAATTGTATGCCATTTTGGAGATTTGTCGGGCTTTCGACCAGATATTCAAAGAGCACCTTGACGGAGTGCGTTCAGGTGGTGATAGAATTTACAATGTCTTTGATAATCAACTTCCTGCAGCTCTTAAAAGGCTATCGTTTGAGAAGCACCTTTCAATGGAAAATGTGAGGAAGCGCATTACAGAGGCGGATGGCTATCAACCTCATTTGATAGCCCCTGAGCAAGGATACAGACATCTTATTGAAACTTCCTTGAGCACTATCAAAGGTCCTGCTGAGGCCACTGTTGATGCGATACATTATGTACTCAAGGATCTTGCTCATAAAGCACTGACTGAGACAGCGGAACTCAAGCAATACCCATCTCTCCGCATTGAGGTTGGAAATGCAGCCGTTGATGCCCTTGAAAAATTACGAGATGAGAGCCGGAAATCAGCAGTGAAACTTGTGGAGATGGAATGCAGCTACTTGACTGTTGATTTTTTCCGAAACTCCCTCAAGATCTAGAGAAGGGTGGAAATCCATCACAATCAGTATTTGATCGATATAATGAGAGTTACCTTCACAGAATTGGAAACAATGTATTGGCATATGTGAACATGGTATGTGGCTATCTGAGGAATGCAATTCCAAAATCTGTCGTTCATTGTCAAGTACGGGAGGCCAAGCGTTCGTTACTTGACCATTTCTTTACCGAACTTGGTAAAAAGGAGGGAAGACAGTTATCAACATTGTTGGATGAAGACCCAGCAGTGATGGAACGGAGAACAGGCTTGGCAAAGAGGCTAGAACTATACAAGAGTGCACAAGCAGAAATAGATGCTGTTGCTTTCTAATTTTGGATATGGTTATTCATTGGACGTGTAAAAACCCATTTTGATCCATCGACCAAGGACCATTGCACAATTACAGAACATGACATTGGGTTGTATGAGATGATAATTTGTATATCTGTTTGAATACTATTATTTGCTTTTGTAGCTTGGGATGTTTTGAAATTGGTCTGTGCTAGGGGTGCATTCAATGTTTGTATTCTAATTTTTAATATCTATTACGAATATTTGACAACTGCCATAAGTTATTTAGCTGAGAGTGATCACTTCTTGAATTCAAGATTACATCACATATCTCTGCTTGTCTTGAAGGCTTCAACTACAGTATTTGAAGAGCAGATAGCATGTAAATGCATTTAGAACAGAATATATTGAGTGAAGTGTTTCTTCTGTAACCTAAATTGGCAAAACTCTTTAGTGGCACCCATGCTTGCAGTATGAGAGTTAGCAGTCATAATCTATAAAAATAGTCCTAAAGGACATGCCTAGAAATCCACAAAATTCATGATTCCACCAAGAGTAGCGAGGTGCTATGCAGACCAGTATGACATTGATGTTGTCACATATATATGTATTTATGTGTGTGACAACATCTAAATAATTGAACCCTGGATTGACACTG

Ace file of the UniGene uagpf_v2_unigene16966

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22973	112/120

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Dynamin-related protein 5A; AltName: Full=Soybean dynamin-like protein 5A; Short=SDL5A gb\|AAC49183.1\| SDL5A [Glycine max]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dynamin-related protein 5a isoform 1	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLP8

Fln msg: Overlapping hits, possible frame ERROR between 1812 and 1803,

Fln protein: MDNLITLVNKIQRACTALGDHGEENALPTLWDALPSIAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKYTDFALVRKEIADETDRITGRSKQVSSVPIHLSIFSPNVVNLTLIDLPGLTKVAIDGQPESVVADIENMVRSFIEKPNSLILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSNNPDYKHIAHRMGSEHLAKMLSKHLETVIKSRIPSLQSLINKTIADIETELSRLGKPIASDAGGQLYAILEICRAFDQIFKEHLDGVRSGGDRIYNVFDNQLPAALKRLSFEKHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIKGPAEATVDAIHYVLKDLAHKALTETAELKQYPSLRIEVGNAAVDALEKLRDESRKSAVKLVEMECSYLTVxxxxxLPQDLEKGGNPSQSVFDRYNESYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGRQLSTLLDEDPAVMERRTGLAKRLELYKSAQAEIDAVAF*

Protein Length: 610

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACCGTAGCAATACAGATACAAGACACCGTCGTGACCTTGGCTGTCACTCAAGATCTGTTTAGAAATTCTATCGACCTTTCTGCCAGAAGCAGCGGGCTTCCTCTCTCTTCTCAGGGAACTGCGGAGTCGGGGAGAGGCCGACTGATTTCTCTTGCTTTCGGGCTGATTGAAATCTGTCCCTCTTTAATGGAGTGCCGGCCGTGGGCATACACGATCTCGATCTGAAGAGTGATTGGGTTATTTGATTTATTTGATTCAGCTCAAGATTTTGGCGAGGAGGCGATCTTGGGATACCTAGTGGCACTGCC_-_ATGGATAATTTAATAACTCTGGTAAACAAGATACAGAGGGCCTGCACCGCGCTCGGTGACCATGGAGAAGAGAACGCTTTGCCGACTCTCTGGGATGCCCTTCCCTCCATAGCCGTCGTGGGAGGACAGAGCTCCGGGAAATCCTCTGTGCTGGAGAGCATCGTTGGAAGGGATTTTTTACCGCGTGGATCAGGTATTGTTACTAGACGGCCGCTTGTCCTTCAACTTCACAAGACTGATGAAGGCAGCAGGGACTACGCCGAGTTCCTTCACCAACCCAGAAAGAAATACACCGACTTTGCACTGGTAAGGAAGGAAATTGCGGATGAGACTGATCGAATTACAGGGCGTTCCAAGCAAGTCTCAAGTGTCCCAATTCACCTTAGTATTTTTTCACCCAATGTTGTAAATTTGACTCTAATTGATCTCCCTGGGTTGACAAAAGTGGCTATTGACGGTCAACCTGAAAGTGTTGTTGCTGATATTGAGAACATGGTTCGCTCTTTCATTGAGAAGCCAAATTCATTAATTTTAGCTATTTCTCCTGCAAATCAAGATCTTGCCACCTCTGATGCCATCAAGATATCTCGAGAGGTAGATCCTAAAGGAGAGAGAACTTTTGGAGTCTTGACAAAGGTAGATCTGATGGATAAGGGAACCAATGCTGTGGATATTTTGGAAGGAAAAGCATATCGTTTGCAGTTTCCTTGGGTTGGTGTTGTGAATCGCTCTCAAGCAGATATCAACAAAAGTGTTGACATGGTTGTTGCAAGACGAAGAGAGCGGGAATATTTTTCAAATAATCCAGACTATAAACATATAGCACACAGAATGGGATCAGAACATCTTGCAAAGATGCTTTCAAAGCATCTTGAAACTGTAATTAAGTCACGCATCCCAAGCCTTCAGTCACTTATCAACAAAACTATTGCTGATATTGAAACAGAGTTGAGTCGACTTGGAAAGCCGATTGCTTCTGATGCTGGAGGACAATTGTATGCCATTTTGGAGATTTGTCGGGCTTTCGACCAGATATTCAAAGAGCACCTTGACGGAGTGCGTTCAGGTGGTGATAGAATTTACAATGTCTTTGATAATCAACTTCCTGCAGCTCTTAAAAGGCTATCGTTTGAGAAGCACCTTTCAATGGAAAATGTGAGGAAGCGCATTACAGAGGCGGATGGCTATCAACCTCATTTGATAGCCCCTGAGCAAGGATACAGACATCTTATTGAAACTTCCTTGAGCACTATCAAAGGTCCTGCTGAGGCCACTGTTGATGCGATACATTATGTACTCAAGGATCTTGCTCATAAAGCACTGACTGAGACAGCGGAACTCAAGCAATACCCATCTCTCCGCATTGAGGTTGGAAATGCAGCCGTTGATGCCCTTGAAAAATTACGAGATGAGAGCCGGAAATCAGCAGTGAAACTTGTGGAGATGGAATGCAGCTACTTGACTGTTxxxxxxxxxxxxxxxCTCCCTCAAGATCTAGAGAAGGGTGGAAATCCATCACAATCAGTATTTGATCGATATAATGAGAGTTACCTTCACAGAATTGGAAACAATGTATTGGCATATGTGAACATGGTATGTGGCTATCTGAGGAATGCAATTCCAAAATCTGTCGTTCATTGTCAAGTACGGGAGGCCAAGCGTTCGTTACTTGACCATTTCTTTACCGAACTTGGTAAAAAGGAGGGAAGACAGTTATCAACATTGTTGGATGAAGACCCAGCAGTGATGGAACGGAGAACAGGCTTGGCAAAGAGGCTAGAACTATACAAGAGTGCACAAGCAGAAATAGATGCTGTTGCTTTCTAA___TTTTGGATATGGTTATTCATTGGACGTGTAAAAACCCATTTTGATCCATCGACCAAGGACCATTGCACAATTACAGAACATGACATTGGGTTGTATGAGATGATAATTTGTATATCTGTTTGAATACTATTATTTGCTTTTGTAGCTTGGGATGTTTTGAAATTGGTCTGTGCTAGGGGTGCATTCAATGTTTGTATTCTAATTTTTAATATCTATTACGAATATTTGACAACTGCCATAAGTTATTTAGCTGAGAGTGATCACTTCTTGAATTCAAGATTACATCACATATCTCTGCTTGTCTTGAAGGCTTCAACTACAGTATTTGAAGAGCAGATAGCATGTAAATGCATTTAGAACAGAATATATTGAGTGAAGTGTTTCTTCTGTAACCTAAATTGGCAAAACTCTTTAGTGGCACCCATGCTTGCAGTATGAGAGTTAGCAGTCATAATCTATAAAAATAGTCCTAAAGGACATGCCTAGAAATCCACAAAATTCATGATTCCACCAAGAGTAGCGAGGTGCTATGCAGACCAGTATGACATTGATGTTGTCACATATATATGTATTTATGTGTGTGACAACATCTAAATAATTGAACCCTGGATTGACACTG

Fln Alignment:

Contig16966___MDNLITLVNKIQRACTALGDHGEENALPTLWDALPSIAXXXXXXXXXXXXLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKYTDFALVRKEIADETDRITGRSKQVSSVPIHLSIFSPNVVNLTLIDLPGLTKVAIDGQPESVVADIENMVRSFIEKPNSLILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSNNPDYKHIAHRMGSEHLAKMLSKHLETVIKSRIPSLQSLINKTIADIETELSRLGKPIASDAGGQLYAILEICRAFDQIFKEHLDGVRSGGDRIYNVFDNQLPAALKRLSFEKHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIKGPAEATVDAIHYVLKDLAHKALTETAELKQYPSLRIEVGNAAVDALEKLRDESRKSAVKLVEMECSYLTVDxxxKLPQDLEKGGNPSQSVFDRYNESYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGRQLSTLLDEDPAVMERRTGLAKRLELYKSAQAEIDAVAF
B8LLP8________________MDNLITLVNKIQRACTALGDHGEENALPTLWDALPSIAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKFTDFAQVRKEIADETDRITGRSKQVSSVPIHLSIYSPNVVNLTLIDLPGLTKVAIEGQAESVVADIENMVRSYIEKPNSIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSSNPDYKHLAHRMGSEHLAKILSKHLETVIKSRIPSLQSLINKTLAEIESELSRLGKPIAADAGGQLYAILEICRAFDQIFKEHLDGVRPGGDRIYNVFDNQLPAALKRLSFEKHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIRGPAEATVDAIHYVLKDLAHKAVSETAELKQYPSLRIEVGNAAIDALEKLRDESRKSALKLVDMECSYLTVDxxxKLPQDLEKGGNPSQSVFDRYNETYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGKQLSTMLDEDPAVMERRAGLAKRLELYKSAQAEIDAVAF

SNPs (tot: 82)

Position	A %	C %	G %	T %	Probability
52		75		25	0.996473
54	25			75	0.996473
55		75		25	0.996473
59	75			25	0.996473
61	25	75			0.996473
62	25			75	0.996473
64	25		75		0.996473
65			75	25	0.996473
66		75		25	0.996473
67	25			75	0.996473
69			25	75	0.996473
71	75	25			0.996473
75		75		25	0.996473
76	75			25	0.996473
95	12			87	0.992554
163			90	10	0.90298
252	75	25			1.0
253		25	75		1.0
254	75			25	1.0
255			75	25	1.0
256			25	75	1.0
258	75	25			1.0
261		25	75		1.0
262	25		75		1.0
263		25	75		1.0
265		25		75	1.0
331		33		66	1.0
514	83		16		0.999991
617	90		10		0.90298
618	90			10	0.90298
621	90	10			0.90298
622	90	10			0.90298
624	90			10	0.90298
625		90	10		0.90298
626	90		10		0.90298
628		90		10	0.90298
632	11			88	0.923564
633		11		88	0.923564
634		12		87	0.992554
635		12	87		0.992554
636	12	87			0.992554
701	83	16			0.994512
706		83	16		0.994512
707	16	83			0.994512
710	83	16			0.994512
713		83	16		0.994512
714	83		16		0.994512
716		83	16		0.994512
718		16		83	0.994512
720		16	83		0.994512
722	83	16			0.994512
723	16			83	0.994512
880		16		83	0.994512
884	83	16			0.994512
885	50			50	1.0
888	50		50		1.0
889	50	50			1.0
1008			33	66	0.997452
1839	88	11			0.923564
1841		11	88		0.923564
1845	11		88		0.923564
1846	88	11			0.923564
1847	88	11			0.923564
1848	88			11	0.923564
1850		88	11		0.923564
1851		90	10		0.90298
1854		90	10		0.90298
1856		90		10	0.90298
1862	81			18	0.999994
1865	81	18			0.999994
2005		15	5	75	1.0
2008		5	15	80	1.0
2014	75		5	20	1.0
2016		5	15	73	1.0
2017	5		15	78	1.0
2021		15		84	1.0
2025	15		84		1.0
2553	20			80	0.995493
2554		20	80		0.995493
2558	20	80			0.995493
2559		80	20		0.995493
2571	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain