SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16948

Length: 1157 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16948

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6628	36/40
SustainPine v2.0	sp_v2.0_unigene79982	2/40

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-like F-box n=1 Tax=Medicago truncatula RepID=A2Q5C7_MEDTR	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	f-box protein at4g00755-like	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
198		33		66	0.997452
200			66	33	0.997452
201		33	66		0.997452
203			66	33	0.997452
204	75		25		0.996473
206		25		75	0.996473
214	75	25			0.996473
216			25	75	0.996473
217			75	25	0.996473
218	75	25			0.996473
223	25		75		0.996473
230	75	25			0.996473
419		20		80	0.995493
421	80			20	0.995493
428	80	20			0.995493
429		20	80		0.995493
430		80		20	0.995493
434		20		80	0.995493
435			80	20	0.995493
439	20	80			0.995493
440	60	40			1.0
506	75	25			0.996473
507	75		25		0.996473
512			25	75	0.996473
513	25	75			0.996473
514	75	25			0.996473
515	75	25			0.996473
518		75	25		0.996473
519			25	75	0.996473
521	75			25	0.996473
522	75		25		0.996473
528	25			75	0.996473
583		20		80	0.995493
585	80			20	0.995493
586	80	20			0.995493
592		40		60	1.0
593			80	20	0.995493
594			80	20	0.995493
595	80		20		0.995493
597	80	20			0.995493
602		20	80		0.995493
605	20		80		0.995493
674	3		9	87	1.0
675		9		90	1.0
676		93		6	0.999264
677	86		10	3	1.0
678	86			13	1.0
679		6	93		0.999364

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain