SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16908

Length: 1417 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16908

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10612	39/41

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Pto-interacting protein 1; Short=Pti1; AltName: Full=Pto kinase interactor 1 gb\|AAC61805.1\| Pto kinase interactor 1 [Solanum lycopersicum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pto kinase interactor	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	85%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVM5

Fln msg: Separated hits, possible frame ERROR between 514 and 526, your sequence is shorter than subject: 302 - 362

Fln protein: VVTLAVTHFSSKSLIGEGSYGPVYHGILKDGRASAIKKLDARKQPDQELLAQVSMVSRLKHENLVELVGYCVDGSMRVLAYEFAPMGSLHDILHGKKGVKGALPGPVLTWMQRVKIAIGAAKGLEYLHEKAQPPIIHRDIKSSNVLLFDDYTAKIADFDISNQSPDMSARxxxxxLGSFGYHAPEYAMTGQSTQKSDVYSFGIVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDPRLKGDYPPKAVAKLAAVAALCVQYEADFRANMSIIVKALRPLLNTQSSPAGGNAAV*

Protein Length: 303

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGTTCAAAATCGCTGATTGGAGAAGGTTCTTATGGTCCGGTATATCATGGTATCTTAAAAGATGGCCGTGCTTCAGCTATTAAAAAGTTGGATGCCAGAAAACAACCAGATCAGGAATTACTTGCACAGGTTTCCATGGTTTCAAGGTTGAAGCATGAAAATCTAGTTGAACTGGTTGGATATTGTGTTGATGGAAGCATGCGAGTGCTTGCTTATGAGTTTGCACCCATGGGGTCACTTCATGACATCCTTCATGGTAAAAAAGGAGTGAAAGGAGCACTACCAGGTCCTGTTCTCACTTGGATGCAGAGAGTGAAAATTGCAATAGGTGCTGCAAAAGGGCTTGAATACCTCCATGAGAAGGCACAACCGCCTATCATTCACCGGGATATTAAGTCTAGCAATGTCTTACTTTTCGACGACTATACAGCAAAGATAGCTGATTTTGATATATCAAACCAATCTCCTGACATGTCGGCACGGCTxxxxxxxxxxxxGCTTGGCTCATTTGGTTATCATGCTCCAGAATATGCGATGACAGGACAATCGACTCAAAAAAGTGATGTTTACAGCTTTGGCATTGTCCTCCTTGAGCTATTGACTGGCAGAAAACCAGTTGATCACACATTGCCACGTGGTCAACAGAGCCTTGTCACATGGGCAACCCCAAGGCTTAGCGAGGATAAAGTGAAGCAATGTGTGGATCCAAGGTTGAAAGGAGACTATCCACCTAAAGCAGTGGCTAAGCTGGCAGCAGTTGCTGCCTTGTGTGTGCAGTATGAAGCTGATTTTCGTGCAAACATGAGTATTATTGTAAAGGCTCTTCGACCTCTATTGAATACACAATCAAGTCCTGCTGGTGGGAACGCAGCTGTGTAATCTGATGTATACCTCAAATTATGTCTTATGATATCCAAATTTTTGCATTATTTAGCTTTTCTTTAACACAAGCAGGCATATCTTCTATCTGCTTGCATATATCTGGATCTGTAGTTTTAATATCGTAAAGGATTAGATTACTTATCACGTGGAAACAGAAGGGAGTCAAGGAAGCAAACGCATACAATTGGACATGGGCATGATATTATGTCTTACCTTACGATATTCCAAATTTGTGCATTATTTAGTTTTTCTTCGATACAGGCGGGCATATTTTGTATCTGCTTGCATATTACTCGACCTGGAATTAAAATATTGTAAAGGATTGGATTACTTTAACATGTGGAAACAGAAGGAAATCAAGATAGCAAATGCATACAATTGGACATGGCAATTCAAAATTGCAGGCACCTGCTGAGTCTTCAGGATATGCAAATATGATGTCTACTGTGTTGCTTTCTATTAGGTTGTCATGATTCATGTTTGATGTATATTAATACTGAAGTGTAAT

Fln Alignment:

Contig16908___HFSSKSLIGEGSYGPVYHGILKDGRASAIKKLDARKQPDQELLAQVSMVSRLKHENLVELVGYCVDGSMRVLAYEFAPMGSLHDILHGKKGVKGALPGPVLTWMQRVKIAIGAAKGLEYLHEKAQPPIIHRDIKSSNVLLFDDYTAKIADFDISNQSPDMSARLxxxxLGSFGYHAPEYAMTGQSTQKSDVYSFGIVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDPRLKGDYXXXXXXXXXXXXXXCVQYEADFRANMSIIVKALRPLLNTQSSPAGGNAAV
A9NVM5________________NFSSKSLIGEGSYGPVYHGILKNGRASAIKKLDARKQPDQELLAQVSMVSRLKHENVVELVGYCVDGSMRVLAYEFAPMGSLHDILHGKKGVKGAQPGPVLTWMQRVKIAIGAAKGLEYLHEKAQPPIIHRDIKSSNVLLFDDYTAKIADFDLSNQAPDMSARLxxxxLGTFGYHAPEYAMTGQSSQKSDVYSFGIVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDPRLKGDYPPKAVAKMAAVAALCVQYEADFRANMSIIVKALRPLLNAQTASAGGSPAV

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
219		33		66	0.997452
221	66			33	0.997452
222		33		66	0.997452
224			66	33	0.997452
225	66		33		0.997452
227		33	66		0.997452
229	66			33	0.997452
232		66	33		0.997452
233		33	66		0.997452
234	66			33	0.997452
237		33	66		0.997452
238	33	66			0.997452
239		33		66	0.997452
241		33	66		0.997452
242	33	66			0.997452
259	66		33		1.0
261		33	66		1.0
263			66	33	1.0
265	33			66	1.0
272		66	33		1.0
273	66	33			1.0
276	66			33	1.0
283		33		66	1.0
284	33	66			1.0
380	60		40		1.0
511	25		75		0.996473
515			75	25	0.996473
516			75	25	0.996473
519			25	75	0.996473
725	75	25			0.996473
730	60			40	1.0
731	60	20	20		0.99255
732	20		80		0.995493
733		80		20	0.995493
734	60	20	20		0.99255
735	80			20	0.995493
736		20		80	0.995493
737		20	80		0.995493
738			20	80	0.995493
739		20	60		0.99255
742			80	20	0.995493
743	60	40			1.0
744	20			80	0.995493
745		80	20		0.995493
746		60		40	1.0
747	60	40			1.0
751		20		80	0.995493
753		20	80		0.995493
777	66	33			1.0
780		33	66		1.0
784	66		33		1.0
786		33	66		1.0
789			66	33	1.0
795	66			33	1.0
798		33		66	1.0
799	33		66		1.0
804	33	66			1.0
841	83		16		0.994512
844	83	16			0.994512
847	83		16		0.994512
848	16			83	0.994512
849		16		83	0.994512
850	83	16			0.994512
855	83		16		0.994512
856	83	16			0.994512
857	83			16	0.994512
859			83	16	0.994512
861	16			83	0.994512
866	16		83		0.994512
917	85	14			0.993533
918	85		14		0.993533
921		12		87	0.992554
923	87			12	0.992554
924		25		75	1.0
925		12	87		0.992554
928			12	87	0.992554
929	87		12		0.992554
930		87	12		0.992554
933		75	12		0.975346
934	75			25	1.0
935	75	12	12		0.975346
936	87		12		0.992554
937		25		75	1.0
939	71		14		0.984337
940		12		87	0.992554
941	12	12	75		0.975346
942	12			87	0.992554
945		12		87	0.992554
1042		70		30	1.0
1135	38	61			1.0
1326	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain