SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16901

Length: 1391 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16901

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21975	27/68
SustainPine v2.0	sp_v2.0_unigene27802	39/68
SustainPine v2.0	sp_v2.0_unigene80897	1/68

Source	Descriptions	Term	Type	e value	Identity
AutoFact	monothiol glutaredoxin-S15 [Arabidopsis thaliana] ref\|NP_001030704.1\| monothiol glutaredoxin-S15 [Arabidopsis thaliana] sp\|Q8LBK6.2\|GRS15_ARATH RecName: Full=Monothiol glutaredoxin-S15, mitochondrial; Short=AtGrxS15; Flags: Precursor dbj\|BAB02297.1\| unnam	-	-	5.60519e-45	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	monothiol glutaredoxin-s15	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Monothiol glutaredoxin-related	IPR004480	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK7

Fln msg: Separated hits, possible frame ERROR between 725 and 728,

Fln protein: MAGAMAHQILQRALRLQSASSVAGARVLYGLSGQKRFSTIGEDPDTHSDFKAVNKAPKDVPSARELVEKDIEQNRIMLYMKGVPSAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTxxPRP*LKRKFVGGSDIILNMHQSGELKEMLKDLIPPSK*

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACCTTTGTCTCTAAGATTCGAGCACCTTGCCAGCTCCCTCGCTTTGGTGATCTAGCTCGCTCGAGCTGCTTGCTCTGGATTTGGGTTACCTCTTTCACTCCTGCTTGTACTGCTGGCTCTTCCGATAAGGGTTAACACGTCTTGAACTCTTCCAATCAGGCTAATAGGTTCCTGAACAACTCCTCCAGTTGCACAGAGGAAAGTTCTGCAACCGTTTGGGCGTCATAGGGCTCCTGAGAAACCCGCGGTGATAAGGTGTTTTGGTTGCTATAAAATCAGGATTATCGAATAATTATTTTCAGTAAGCAC_-_ATGGCTGGGGCAATGGCTCATCAGATCCTGCAGAGAGCCCTGAGATTACAATCAGCTTCTTCAGTTGCAGGAGCCAGGGTATTGTATGGGTTGAGTGGACAAAAGAGGTTCTCAACTATTGGAGAAGATCCTGACACTCATAGTGATTTCAAAGCTGTAAATAAGGCCCCAAAGGATGTTCCCTCAGCACGTGAGTTGGTGGAGAAGGATATTGAACAAAATCGTATAATGCTATATATGAAAGGAGTTCCATCTGCTCCTCGCTGTGGCTTCAGTGCCTTAGCTGTCAAAGTGCTGCAAGAATATGATGTTCCATTTAGTGCAAGAAATATATTGGAGGATCAAGAGCTCAAAGAAAGCATTAAATCTTTCAGCAATTGGCCCACCTTxxxGCCCAGACCTTGACTAAAACGCAAGTTTGTTGGAGGCTCTGATATTATCTTAAACATGCATCAGTCTGGTGAACTAAAGGAAATGTTGAAGGATCTGATACCACCCAGTAAGTAG___AGGGTCAGGCATGATTCTTGTGGGCTCTGGAATGCGTTATGTTGCATTCTATATTACAATTACTCCATGTTTAATAAGTTATCTAAGCTGAGGTTGTAGGAACGTGTTGATTATGCATCTTATCTAATGGGATGGTTCTTAAGAATTGTTGTATTCAACTTAACAATTTATGATGTTTATCTCGCTATTAGCCTTTGATATTGTAAAATGTTATGTTTCCATTTGATATTTTATTCTGCCCCGAAGTATTGTAGTGAAATACAAAGGTGTCTTAACATCTGGACAGTACTTTTACATCGATTAGTTCGTATTTTAAAGTTGACACACAATATGAAAGGGAAGCCTGCTACTAATAAAATAGATTTCCTAGTCTCATCCTTGCAGAGGCCTGGACATGGAATACCTTGTATTGCATTCAATAACAATGATTGTTAAAGGTCTCAAAGGATTCATATTCAATAAGACGAGAGCATGTAGACCAGGAAGGTCTCAAAGGATTGTTAAAGATGAACATAAACGTTGAAGCTCCAGGGTTTATATCTTCACTTTG

Fln Alignment:

Contig16901___MAGAMAHQILQRALRLQSASSVAGARVLYGLSGQKRFSTIGEDPDTHSDFKAVNKAPKDVPSARELVEKDIEQNRIMLYMKGVPSAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFxPRP*LKRKFVGGSDIILNMHQSGELKEMLKDLIPPSK
A9NWK7________________MAGAMAHQILQRALRLQSASSASGVRVLYGLSGQKRFSTIGEDPDTHSDFQAVNKAPKDVPSARELVEKDIKNNHIMLYMKGVPAAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFxPQIFIKGEFVGGSDIILNMHQSGELKETLKDLLPLNK

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
42	60	40			1.0
43			40	60	1.0
47	60			40	1.0
56		60	40		1.0
58	60			40	1.0
63	40	60			1.0
69	20	80			0.995493
98			10	90	0.90298
99			90	10	0.90298
101	10			90	0.90298
104		10	90		0.90298
105	10		90		0.90298
106	60	30		10	1.0
144		70		30	1.0
154	30	70			1.0
165		70	30		1.0
188		30		70	1.0
261		88	11		0.923564
264	88			11	0.923564
267	88	11			0.923564
268	88	11			0.923564
269		87		12	0.992554
270		87		12	0.992554
271		87	12		0.992554
274			87	12	0.992554
277		12	87		0.992554
280	87	12			0.992554
609			66	33	0.997452
620	33		66		0.997452
663	60	40			1.0
665	60			40	1.0
666	60	40			1.0
667	60		40		1.0
670		40		60	1.0
671	60	40			1.0
676	60			40	1.0
678		40	60		1.0
690	85		14		0.993533
691	85			14	0.993533
692	85	14			0.993533
694	85			14	0.993533
695	85		14		0.993533
697		14	85		0.993533
699	85			14	0.993533
701			14	85	0.993533
702	85	14			0.993533
703	85			14	0.993533
704	85		14		0.993533
707	14			85	0.993533
708		14		85	0.993533
733		85	14		0.993533
734	85			14	0.993533
737		14		85	0.993533
742			14	85	0.993533
830	88	11			0.999952
837	88			11	0.999952
849		11	88		0.999952
989	89	3			0.998606
1001		50	3	46	1.0
1003	46	3			1.0
1007	48		3		1.0
1008	44		3		1.0
1010	46			3	1.0
1011	46		3		1.0
1013		3		46	1.0
1014	3			48	1.0
1015	44	3			1.0
1017		7	92		0.999602
1028		53		46	1.0
1030		53		46	1.0
1032	46		50		1.0
1048			45	54	1.0
1052	45		4	50	1.0
1088			55	44	1.0
1107		43		56	1.0
1119	53		46		1.0
1203	41		58		1.0
1233		54		45	1.0
1258		50		50	1.0
1310		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain