SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16891

Length: 230 nt

UniGene Fasta

>uagpf_v2_unigene16891
CGTCGTGACCTTGGCTGTCACTCTGACTTTGGCTGGACCATAGTATTCCATGGTTTCTTGATTCAGCGCTTTCACTAGGCATTGTTCTTCATGGTCTTTGTGCTTCTAAAGCAGACTGCAATGTTTTATTATTTCCTTTTCCACGCTTTTGGGGTCCTCCTGTGGCAGAAGCTGGTTTGAGCCTCGTTTATTGTTTGGCAGGGTTTTATTGCTACTTATCTGGTTTAGCC

Ace file of the UniGene uagpf_v2_unigene16891

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene870	4/7

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	gpi inositol-deacylase	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	cellular protein localization	GO:0034613	Biological Process	60%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	60%
Blast2go	intrinsic to membrane	GO:0031224	Cellular Component	60%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	GPI inositol-deacylase PGAP1-like	IPR012908	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AVI1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 61 aas, your sequence is shorter than subject: 76 - 239

Fln protein: S*PWLSL*LWLDHSIPWFLDSALSLGIVLHGLCASKADCNVLLFPFPRFWGPPVAEAGLSLVYCLAGFYCYLSGLA

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGACTTTGGCTGGACCATAGTATTCCATGGTTTCTTGATTCAGCGCTTTCACTAGGCATTGTTCTTCATGGTCTTTGTGCTTCTAAAGCAGACTGCAATGTTTTATTATTTCCTTTTCCACGCTTTTGGGGTCCTCCTGTGGCAGAAGCTGGTTTGAGCCTCGTTTATTGTTTGGCAGGGTTTTATTGCTACTTATCTGGTTTAGCC

Fln Alignment:

Contig16891___SIPWFLDSALSLGIVLHGLCASKADCNVLLFPFPRFWGPPVAEAGLSLVYCLAGFYCYLSGLA
A5AVI1________________SFPWLLDSALCVGVIFHGICDSKPEFNPLLFPFPVI--PGFQEVRRSHIYLFAGLYSYLSGLA

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
44	66		33		0.997452
46	66	33			0.997452
50			33	66	0.997452
51	33			66	0.997452
54	66			33	0.997452
59		25		75	0.996473
60			50	50	1.0
64		25	25	50	0.995533
66		25	75		0.996473
69		25		75	0.996473
71	75			25	0.996473
72			75	25	0.996473
73		80	20		0.995493
77			20	80	0.995493
78			20	80	0.995493
79			20	80	0.995493
80	20	80			0.995493
81	80	20			0.995493
84	60			20	0.99255
85		20	80		0.995493
86	20		80		0.995493
89	80		20		0.995493
91		20		80	0.995493
92	20		80		0.995493
93		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain