SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16884

Length: 643 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16884

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16297	39/40

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative gibberellin-regulated protein [Arabidopsis thaliana] gb\|AAS47605.1\| At1g74670 [Arabidopsis thaliana] gb\|AEE35620.1\| putative gibberellin-regulated protein [Arabidopsis thaliana]	-	-	8.0e-33	60%
FL-Next	tr=Gasa5 like protein; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Blast2go	gibberellin induced protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	80%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	80%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	80%
Blast2go	response to karrikin	GO:0080167	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
93	66	33			0.997452
96			33	66	0.997452
98			33	66	0.997452
99	33			66	0.997452
100		33		66	0.997452
101	33	33	33		0.997753
104			33	66	0.997452
105		75	25		0.996473
106		75		25	0.996473
107		75		25	0.996473
108	50		50		1.0
110		25	75		0.996473
111	50		50		1.0
113		25	50	25	0.995533
114		75		25	0.996473
116			25	75	0.996473
119			25	75	0.996473
121		25		75	0.996473
127		25		75	0.996473
128	25			75	0.996473
176	76		15	7	0.999983
177			76	23	1.0
181			15	84	0.999986
185	84			15	0.999986
187	84		15		0.999986
189	80	6		13	0.999961
192	86	13			0.999973
194		13		86	0.999973
195		5	82	11	0.999919
196		11	88		0.999952
197	11	5	76	5	0.999894
325	80	19			1.0
328		13	86		1.0
329		86	13		1.0
332	13	86			1.0
333		13	86		1.0
335	83			16	1.0
336	83		3	13	1.0
337	86		13		1.0
343	8			88	0.999999
344		11	88		1.0
346		2	88		0.999999
347	2	11		85	1.0
348	8	2	88		0.999999
431		16		84	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
557	569	TGAG TGAG TGAG T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain