SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16878

Length: 970 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16878

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22764	8/156
SustainPine v2.0	sp_v2.0_unigene24163	1/156
SustainPine v2.0	sp_v2.0_unigene76783	144/156
SustainPine v2.0	sp_v2.0_unigene79239	2/156

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine-rich repeat extensin-like protein 3 n=1 Tax=Arabidopsis thaliana RepID=LRX3_ARATH	-	-	66%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	27%
Blast2go	extensin-like protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	76%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 784 aas, your sequence is shorter than subject: 323 - 1145

Fln protein: RRDLRRDLGCHSITGNWVGPNVCNYTGVFCSAPPYNKSILVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGIVPHSFKNMTLLYELDISNNRFAGPFPKVVIGLPSLKYLDIRFNEFEGKLPTKLFDKDLDAIFVNNNRFHLEIPSNLGNSPVSVVVFANNNLKGCVPPSLGKMAATLNEIIFLNNNLSACLPSEIGLLKNLTVFDVSFNKLVGPLPDSIGQMDSLEQLDVAHNMLTGKIPQSICALPNLDNFTYSYNFFTGEAPNCLALPSRGVTFDDKRNCIPSRPLQRTLQQCSAFLSRPGVDCSASSCNPRR

Protein Length: 324

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCAATAACTGGGAACTGGGTCGGCCCTAATGTCTGTAACTACACTGGTGTCTTTTGTTCTGCTCCACCGTACAACAAATCCATTTTGGTTGTAGCGGGCATTGATCTGAACCATGCAGACATTGCAGGGTATCTGCCTACGGAGCTCGGCCTTCTCACAGATCTGGCATTGTTCCATATCAATACTAACAGGTTCTGTGGGATTGTGCCTCATAGTTTCAAGAATATGACCCTGCTGTATGAGCTTGATATCAGTAATAACAGGTTTGCTGGGCCATTCCCAAAGGTAGTTATCGGTCTACCTTCACTGAAGTACTTGGACATTCGGTTCAATGAGTTCGAGGGAAAGCTGCCCACGAAGCTGTTTGACAAAGATCTTGATGCCATCTTCGTCAACAATAACAGGTTTCATCTTGAAATCCCTTCTAATCTTGGAAATTCTCCTGTTTCTGTTGTTGTTTTCGCCAACAATAATCTCAAAGGATGCGTTCCTCCCAGTCTGGGAAAAATGGCTGCCACTCTTAATGAGATCATATTCTTGAATAATAATCTGTCAGCCTGCCTGCCATCTGAGATTGGCTTGCTGAAAAACCTGACTGTCTTTGATGTGAGTTTCAATAAGCTAGTTGGGCCTCTGCCAGACAGCATTGGGCAGATGGACAGCTTGGAACAATTGGATGTTGCCCACAATATGTTAACTGGAAAGATCCCCCAGAGCATCTGTGCATTGCCCAATTTGGATAATTTTACTTACTCCTACAACTTCTTTACTGGGGAGGCACCCAATTGCCTGGCCCTTCCTAGCAGAGGCGTTACCTTTGATGACAAGAGAAATTGTATCCCCAGCAGGCCTCTTCAGAGAACACTCCAACAATGTTCCGCGTTCCTGTCTCGGCCTGGCGTAGATTGCTCTGCATCCTCCTGTAATCCTCGGAGGA

Fln Alignment:

Contig16878___NVCNYTGVFCSAPPYNKSILVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGIVPHSFKNMTLLYELDISNNRFAGPFPKVVIGLPSLKYLDIRFNEFEGKLPTKLFD-KDLDAIFVNNNRFHLEIPSNLGN--SPVSVVVFANNNLKGCVPPSLGKMAATLNEIIFL---NNNLSACLPSEIGLLKNLTVFDVSFNKLVGPLPDSIGQMDSLEQLDVAHNMLTGKIPQSICALPNLDNFTYSYNFFTGEAP
Q9FEU2________________NPCKWTGVICSLDHEN----LVTEINIQSVQIAGNVPSQFAVLGSLR------------------------SLVISAANLTGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCHNLVDLVVF-DNQLSGKIPAELGRLA---NLEVFRAGGNENIEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIP

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
344			14	85	0.993533
348		85	14		0.993533
352	83	16			0.994512
353		16	83		0.994512
355	83			16	0.994512
356		83	16		0.994512
357		33	16	50	1.0
358		16		83	0.994512
359			83	16	0.994512
361	83			16	0.994512
364		16		83	0.994512
365		33		66	1.0
366	33	66			1.0
367	16		83		0.994512
368			83	16	0.994512
431		60		40	1.0
495	33		66		0.997452
506		66	33		0.997452
519	66		33		0.997452
520	66		33		0.997452
521	66	33			0.997452
528		33	66		0.997452
536		66		33	0.997452
548	66	33			0.997452
556		37		62	1.0
563			12	87	0.992554
564	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain