SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16831

Length: 629 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16831

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27972	28/33

Source	Descriptions	Term	Type	Identity
AutoFact	Caleosin n=1 Tax=Cycas revoluta RepID=B8XX15_CYCRE	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	ca+2-binding ef hand protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	77%
Blast2go	alpha-Linolenic acid metabolism	00592	77%
Blast2go	Biosynthesis of plant hormones	01070	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	oxylipin metabolic process	GO:0031407	Biological Process	77%
Blast2go	stomatal movement	GO:0010118	Biological Process	77%
Blast2go	response to fungus	GO:0009620	Biological Process	77%
Blast2go	response to salt stress	GO:0009651	Biological Process	77%
Blast2go	response to desiccation	GO:0009269	Biological Process	77%
Blast2go	response to cold	GO:0009409	Biological Process	77%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	77%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	77%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	77%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	77%
Blast2go	microsome	GO:0005792	Cellular Component	77%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	77%
Blast2go	vacuole	GO:0005773	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Caleosin	IPR007736	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
141	14		85		0.993533
143		85		14	0.993533
144			85	14	0.993533
145	14			85	0.993533
146		14	85		0.993533
147	85	14			0.993533
151			14	85	0.993533
154	14	85			0.993533
155	14			85	0.993533
156	14		85		0.993533
157		14		85	0.993533
221	77	22			0.999999
222	77		22		0.999999
226		77	22		0.999999
233	77		22		0.999999
237	77		22		0.999999
238		77		22	0.999999
240	11	77			0.968132
241	77	11			0.968132
242	88			11	0.923564
247	90		10		0.90298
249		90	10		0.90298
250	10			90	0.90298
251	90	10			0.90298
252		10	90		0.90298
257	90	10			0.90298
259	90		10		0.90298
260		90		10	0.90298
265	90			10	0.90298
268	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain