SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16828

Length: 713 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16828

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5209	40/50

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 4,6-dehydratase [Arabidopsis thaliana] sp\|Q9SYM5.1\|RHM1_ARATH RecName: Full=Probable rhamnose biosynthetic enzyme 1 gb\|AAD30579.1\|AC007260_10 Similar to dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana] gb\|AAK68773.1\| Similar to dTDP-D-glu	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	probable rhamnose biosynthetic enzyme 1-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	dTDP-4-dehydrorhamnose reductase.	EC:1.1.1.133	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Polyketide sugar unit biosynthesis	00523		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Biosynthesis of secondary metabolites	01110		89%
Blast2go	UDP-glucose 4,6-dehydratase.	EC:4.2.1.76	-	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	89%
Blast2go	dTDP-glucose 4,6-dehydratase.	EC:4.2.1.46	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Polyketide sugar unit biosynthesis	00523	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	extracellular polysaccharide biosynthetic process	GO:0045226	Biological Process	89%
Blast2go	UDP-rhamnose biosynthetic process	GO:0010253	Biological Process	89%
Blast2go	flavonol biosynthetic process	GO:0051555	Biological Process	89%
Blast2go	auxin efflux	GO:0010315	Biological Process	89%
Blast2go	dTDP-4-dehydrorhamnose reductase activity	GO:0008831	Molecular Function	89%
Blast2go	UDP-glucose 4,6-dehydratase activity	GO:0050377	Molecular Function	89%
Blast2go	UDP-L-rhamnose synthase activity	GO:0010280	Molecular Function	89%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	89%
Blast2go	dTDP-glucose 4,6-dehydratase activity	GO:0008460	Molecular Function	89%
Blast2go	soluble fraction	GO:0005625	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
87	25	75			0.996473
88		50	50		1.0
89	25			75	0.996473
91	25		50	25	0.995533
93			50	50	1.0
94	50	25		25	0.995533
95	25	75			0.996473
97	50	50			1.0
98			50	50	1.0
103	50			50	1.0
104		50	50		1.0
105	50			50	1.0
106	50	50			1.0
111	50			50	1.0
167			28	71	1.0
168			71	28	1.0
169	71	28			1.0
170	71		28		1.0
173	28	71			1.0
177		71		28	1.0
178	71			28	1.0
179	71		28		1.0
181		28		71	1.0
185	71	28			1.0
187		28	71		1.0
188	71			28	1.0
192			87	12	0.992554
193	87	12			0.992554
196			7	76	0.999983
220	82	4	4	8	0.999136
221		4	13	82	1.0
222	8		4	86	0.999539
224	82	8	4		0.999136
227	91		8		0.999807
228		13		86	1.0
231	82	17			1.0
233		8	91		0.999807
282			6	93	0.999153
283		87		6	0.992016
285	6		6	87	0.992016
289		6		93	0.999153
291	93			6	0.999153
292	93		6		0.999153
294	93	6			0.999153
296		93	6		0.999153
297	93			6	0.999153
298	93	6			0.999153
353	91		8		1.0
355	5	2	88	2	0.985613
358		5	2	91	0.995208
387	94			5	0.998744
389	5			94	0.998744

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain