SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16798

Length: 501 nt

UniGene Fasta

>uagpf_v2_unigene16798
CGTCGTGACCTTGGTTGTGACCTTGGCCAACAATGGCAAGATTAGGAGAAGAAAGGGAAGAAAATAGTGCGGTGTTCGAAGATTACCTGCCGGTGGTGGCAGAGAAATTAGGGGAAGAGGGCCTAATGGATGAGATGTGCAATGGCTTCCGTCTCCTGGCGGATGCGGAGACAGGCGTCATCACCTTCGATAGTTTGAAGAGGAACGCTGCGGTGTTGGGCATGGAATCCATGAAAGACGAGGAGCTCCGGGCAATGATAGAAGAAGGCGACCTGGACGGCGATGGGGTTCTGGATATGAACGAATTCTGCGTTCTCATGATCAGATTGAGTCCGTCCTTCATGATGGAGGCCGAAAAGTCGTTACAAAAGGCAGCCATGGATATTATCCATACCTTTGATTTTGATAGCTCTGTGCGAGCTTCAATTCAGGATTGGGGAATCGATTGGCTTAAGCCGCTCTCTTGCCCATCCCTTCGAACCTTCCAGTATATTTACATCG

Ace file of the UniGene uagpf_v2_unigene16798

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18862	8/9
SustainPine v2.0	sp_v2.0_unigene78249	1/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ	-	-	5.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	calcium binding protein with ef-hand motif	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMS9

Fln msg: STOP codon was not found. Distance to subject end: 16 aas,

Fln protein: MARLGEEREENSAVFEDYLPVVAEKLGEEGLMDEMCNGFRLLADAETGVITFDSLKRNAAVLGMESMKDEELRAMIEEGDLDGDGVLDMNEFCVLMIRLSPSFMMEAEKSLQKAAMDIIHTFDFDSSVRASIQDWGIDWLKPLSCPSLRTFQYIYI

Protein Length: 157

Fln nts: CGTCGTGACCTTGGTTGTGACCTTGGCCAACA_-_ATGGCAAGATTAGGAGAAGAAAGGGAAGAAAATAGTGCGGTGTTCGAAGATTACCTGCCGGTGGTGGCAGAGAAATTAGGGGAAGAGGGCCTAATGGATGAGATGTGCAATGGCTTCCGTCTCCTGGCGGATGCGGAGACAGGCGTCATCACCTTCGATAGTTTGAAGAGGAACGCTGCGGTGTTGGGCATGGAATCCATGAAAGACGAGGAGCTCCGGGCAATGATAGAAGAAGGCGACCTGGACGGCGATGGGGTTCTGGATATGAACGAATTCTGCGTTCTCATGATCAGATTGAGTCCGTCCTTCATGATGGAGGCCGAAAAGTCGTTACAAAAGGCAGCCATGGATATTATCCATACCTTTGATTTTGATAGCTCTGTGCGAGCTTCAATTCAGGATTGGGGAATCGATTGGCTTAAGCCGCTCTCTTGCCCATCCCTTCGAACCTTCCAGTATATTTACATCG

Fln Alignment:

Contig16798___MARLGEEREENSAVFEDYLPVVAEKLGEEGLMDEMCNGFRLLADAETGVITFDSLKRNAAVLGMESMKDEELRAMIEEXXXXXXXXXXMNEFCVLMIRLSPSFMMEAEKSLQKAAMDIIHTFDFDSSVRASIQDWG
B8LMS9________________MARVREE-VETSVVFEDYLPMMTETIGEEGLMEEMCNGFRLLADAEKGVITFHSLKKNAALLGMESMKDDELQAMIEEGDLDGDGALDLNEFCVLMIRLNPSFMAEAEKWLQKAAMDFIHTFDFDSSVRASVQGRG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
116		33	66		0.997452
118	66			33	0.997452
119	66	33			0.997452
121	66			33	0.997452
123	33		66		0.997452
124		33	66		0.997452
126		66		33	0.997452
129	66		33		0.997452
130	66	33			0.997452
134		33	66		0.997452
138		33	66		0.997452
170		14		85	0.993533
176		14	85		0.993533
177	85	14			0.993533
178		85		14	0.993533
179	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain