SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16742

Length: 1457 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16742

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15589	224/233
SustainPine v2.0	sp_v2.0_unigene73831	1/233

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin 2 n=1 Tax=Cunninghamia lanceolata RepID=A1Z1N8_CUNLA	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	expansin	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW93

Fln msg: Overlapping hits, possible frame ERROR between 452 and 445,

Fln protein: MGMGIPVHFPTILLLFIVRACLVYGRIPGVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPEWCHLxxxxSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQTGWIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTSWNIVPPNWEFGQTFSGKQFRI*

Protein Length: 265

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCAATTGTCGTATCCTATCTCCCTCTCCTGCATTTTGCTCTGCTCCCAGGAAGGATCTCGGTTCCCTTCCCTCAGTACTCTGCTCTGCCTCTGAGATTGTAACG_-_ATGGGAATGGGAATTCCAGTGCATTTTCCGACCATTTTGTTGCTGTTTATCGTTAGAGCTTGTCTGGTGTATGGGCGAATCCCGGGTGTTTATCAGCCTGGGCCTTGGAATGAAGCACATGCAACTTTCTACGGTGGAAGCGATGCCTCGGGCACCATGGGGGGTGCTTGTGGGTATGGCAACCTGTACAGCCAGGGATATGGAGTTCAATCGGCAGCATTGAGCACAGCTCTGTTCAACAGCGGGCTAAGCTGTGGAGCCTGCTTTGAGATCAAATGTGTGAATGACCCAGAATGGTGTCACCTCxxxxxxxxxxxxTCGATTTTGGTCACGGCCACCAATTTCTGCCCTCCCAACTATGCGCTGCCTAACGACAATGGCGGCTGGTGCAATCCTCCTCGCCCCCATTTTGATCTCTCCATGCCAATTTTCCTCAAGATGGCCGAGTACCGTGCCGGAATTGTGCCAGTTCTCTTCAGAAGAGTGCCTTGCGTGAAGCAAGGGGGAGTGAGATTCACCATCAATGGCTTCAAATACTTCAACCTGGTTCTCATCACAAATGTGGCTGGAGCAGGGGACTTGGTGAGAGTGAGCGTGAAGGGTAGCCAGACCGGGTGGATTCCATTGTCCAGAAACTGGGGCCAAAATTGGCAATGCAGCACCGTCCTGGTCGGGCAGAGCCTCTCCTTCAGAATAACTGGCAGTGACCGCAGGACCTCTACATCCTGGAACATTGTGCCTCCAAATTGGGAGTTTGGCCAGACCTTTTCAGGAAAGCAGTTCAGAATCTGA___TTACAATAGATTCTTCAACATGTGCTGTCTTCTCTCTATCTATCTATCTAGATTTGTATTTGTCAATCGAACGAAGGGATTCCTAATCGGTTTCTTCCACTCAATAGCTTATTGACACAACGATAAGTTGTTGTTGCTTTTGTTCCTTTTTTCTCCCTTATATTTTGAGCTTAACCTTCTTCCCCAGTGCGGGCGCGGCCGAGGTTGCGAAAGAAAAGCAACCCGCATTATGTATACAGTCCTAATTCCTACTAATAAGTCATGTCCTGTCCAGTCCAGTCCAGTCATGTCCCACTTATGGTATAGCCATCTATCATTCTGGTGTTTAATTGTCTGGTTCTAGAAAAACAAGAAATCAGAGCCAAGCTTAGCTGTGTAATGTGTAGCTATTTTTGGGGAAGAAGCTGTTGGTAATGGTATTGGTAGTGGTTTAAGCAGGAGTGAGTGTGGTGTGTGACAACTACAGCCCATTTTTCATGTACTGCCGCTGTGTTTATGAAGATTAAGAAAAAAAAGTTATGTATCTATTT

Fln Alignment:

Contig16742___MGMGIPVHFPTILLLFIVRACLVYGRIPGVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPEWCHLxxxSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQTGWIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTSWNIVPPNWEFGQTFSGKQFRI
A9NW93________________MGMGIQALVHTFWLLIVGRFCLVYGRIPGVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPQWCHPxxxSILITATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLRMAEYRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQTGWIPLSRNWGQNWQCSTVLVGQSLSFRVTGSDRRTSTSWNIVPPNWEFGQTFSGKQFRV

SNPs (tot: 130)

Position	A %	C %	G %	T %	Probability
13		81	18		0.999994
15		18		81	0.999994
16		81		18	0.999994
19		18	81		0.999994
24	18			81	0.999994
26			81	18	0.999994
30		18		81	0.999994
33		81	18		0.999994
37	33	16		8	1.0
38	97	2			0.914425
52		2		97	0.907451
55		97	2		0.907451
56		97	2		0.907451
59		97	2		0.907451
159		2	97		0.999619
161	97	2			0.99964
178			1	96	0.998449
239			97	2	0.938918
285		97	2		0.966038
289			97	2	0.977151
295	96			3	0.990463
300		6	93		0.999453
301	6		93		0.999453
302		6	89	3	0.998304
304		7	92		0.999664
305	6	93			0.999453
434		16	83		0.999991
440		71	28		1.0
445		66		33	1.0
448		33	66		1.0
450	60		40		1.0
451	60			40	1.0
453	40	60			1.0
455			16	66	0.988813
456		16		83	0.994512
457	16	83			0.994512
460		16		83	0.994512
461		16		83	0.994512
469		87		12	0.992554
471			75	25	1.0
474		87	12		0.992554
475	87			12	0.992554
477	12	87			0.992554
479	87			12	0.992554
481			12	87	0.992554
482			12	87	0.992554
487		85		14	0.993533
489	14			85	0.993533
491		85		14	0.993533
525		36	63		1.0
531	63	36			1.0
532	63			36	1.0
535		63	36		1.0
539		63	36		1.0
543	25	66		8	1.0
545		66	8	25	1.0
546		83		16	0.999991
547	25	66	8		1.0
630			41	58	1.0
649	7	7	69		0.999985
753	41	58			1.0
814			90	10	0.90298
816			90	10	0.90298
819		10	90		0.90298
820	90			10	0.90298
821		10	90		0.90298
822	10	90			0.90298
853	90		10		0.90298
854			90	10	0.90298
860		90		10	0.90298
861			10	90	0.90298
862	90		10		0.90298
864	90		10		0.90298
870		10	90		0.90298
920	85	14			0.993533
923		14		85	0.993533
924		85	14		0.993533
925	85			14	0.993533
928	85	14			0.993533
930		85		14	0.993533
931			14	85	0.993533
933	85	14			0.993533
935			14	85	0.993533
936	85			14	0.993533
939	85	14			0.993533
954		12		87	0.992554
957		12	87		0.992554
958		87	12		0.992554
959	7	35		57	1.0
961	7			42	1.0
963		7	21	71	1.0
964			14	85	0.999981
965	14	57	21		1.0
966	21	14		64	1.0
968		21	7	71	1.0
969		64		21	1.0
970		12		87	0.999964
971	50		50		1.0
972			31	68	1.0
975	62	6	31		1.0
976		12		87	0.999964
978	18			68	1.0
979	68	18	12		1.0
980			12	75	0.999931
983	70	5	11		0.999887
984		11	76	11	0.999894
985	82	11		5	0.999919
986	11	5		70	0.999887
987		11	5	82	0.999919
989		11	88		0.999952
990	17			82	1.0
1013		9	4	86	0.999642
1016	9	86	4		0.999642
1042			8	92	0.999718
1044	88	8	4		0.999262
1045		4	8	88	0.999262
1050	92			8	0.999718
1051		92		8	0.999718
1052	88		8		0.999262
1053	88		8	4	0.999262
1055			88	8	0.999262
1056	92		8		0.999718
1058	92	8			0.999718
1060		8	92		0.999718
1062		8		92	0.999718
1063	8		92		0.999718
1087	11			88	1.0
1089		91		8	1.0
1091	8			91	1.0
1147	93	2			0.98137

SSRs (tot: 2)

Start position	End position	Sequence	Length
962	977	TCTA TCTA TCTA TCTA	16
1196	1213	GTCCA GTCCA GTCCA GTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain