SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16697

Length: 1235 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16697

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2465	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein n=6 Tax=Arabidopsis RepID=F4I5A3_ARATH	-	-	62%
FL-Next	tr=P-loop containing nucleoside triphosphate hydrolase-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	75%
Blast2go	ATPase activity	GO:0016887	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B3H7I9

Fln msg: Distance to subject end: 473 aas, your sequence is shorter than subject: 357 - 827

Fln protein: MEQKNVLMSALSVGLGIGLGVGLATGRSQTFQKLTSPCSSVNYQEIMELELNNRLLDGKSCSVTFEEFPYSLSEQTKALLTSGAFVYLKEEQFSKYTRNLSPASRAILLLGHAEPYHQMLAKALAHYFDAKLLLLDATDFCLKLQSKHGGGTDSQDLKSFSEAALERIGSLFESFTLPTGAEQRNCKSGSLWRSNSGIEPKLTSSEGTSNLQSCRSNSASEPDFSRYGSSVMNTTNQASLKRANSWSFDDKLLVRSLYKVLVSVSKTSPVILYLRDIERLVFRGPKTYQMFFNMIKQLSGPILILGSRILGSQEKPCYGDTEKKLSDLFPYTIDTKPPEDNTEHGAWKSKLRRGHRK

Protein Length: 358

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAGAGGAACGAGAGCAGAAGAGACAGGCGGCCTGGGTTGAGCTGAAATTGTAGCTTTGGAAGAGAATTAGGTGTGGAGGCTCTGGGATTCGATCCGAGGTCGGAGGTCGCTTGAATCAAAGACCCCAAAACATATCAG_-_ATGGAGCAGAAGAACGTATTGATGTCGGCCCTCAGCGTGGGGCTCGGAATCGGCCTGGGTGTCGGACTCGCCACAGGCCGTTCGCAGACCTTTCAGAAATTGACGTCTCCCTGTTCTTCTGTCAATTACCAGGAAATAATGGAACTCGAGCTCAACAATCGCCTCCTTGACGGGAAATCTTGTAGTGTTACCTTCGAAGAATTCCCTTATTCCCTCAGTGAGCAGACGAAGGCTTTGTTGACGAGCGGGGCTTTTGTTTATTTGAAAGAAGAGCAGTTTTCTAAGTACACTCGAAATCTCTCGCCTGCGAGTCGAGCCATTTTGCTCTTGGGCCATGCAGAGCCCTACCACCAAATGCTTGCCAAGGCATTGGCACATTACTTTGATGCTAAATTGCTTTTGCTGGATGCTACTGACTTTTGCTTGAAGTTGCAAAGCAAACATGGAGGAGGCACTGATTCTCAGGATTTAAAGTCCTTTTCTGAAGCTGCATTAGAGCGCATTGGTAGCCTGTTTGAATCCTTCACCCTGCCTACAGGTGCAGAGCAAAGAAATTGCAAATCAGGCAGTCTTTGGCGATCAAACAGTGGCATTGAACCAAAGCTGACGTCCTCTGAAGGAACAAGTAACCTTCAAAGTTGTAGGAGTAACTCGGCATCAGAACCTGATTTCTCCAGATATGGGTCATCTGTGATGAACACCACAAATCAAGCTTCATTAAAACGTGCAAATTCTTGGTCATTTGACGACAAATTACTTGTGCGATCGCTTTATAAGGTCTTGGTTTCTGTCTCAAAGACTAGTCCTGTGATTTTGTATTTGCGGGATATTGAGAGACTTGTATTCAGAGGGCCAAAGACCTATCAAATGTTTTTTAATATGATAAAACAACTCTCTGGGCCCATTTTAATACTAGGTTCCAGAATCTTGGGCTCACAAGAGAAGCCATGCTATGGAGATACTGAGAAAAAGTTGTCAGATTTATTTCCCTATACCATTGACACAAAACCCCCAGAGGATAATACAGAACATGGGGCCTGGAAGAGCAAGCTTAGAAGAGGACATAGAAAG

Fln Alignment:

Contig16697___MELELNNRLLDGKSCSVTFEEFPYSLSEQTKALLTSGAFVYLKEEQFSKYTRNLSPASRAILLLGHAEPYHQMLAKALAHYFDAKLLLLDATDFCLKLQSKHG-GGTDSQDLK-SFSEAALERIGSLFESFTLPTGAEQRNCKSGSLWRSNSGIEPKLTSSEGTSNLQSCRSNSASEPDFSRYGSSVMNTTNQASLKRANSWSFDDKLLVRSLYKVLVSVSKTSPVILYLRDIERLVFRGPKTYQMFFNMIKQLSGPILILGSRILGSQEKPCYGDTEKKLSDLFPYTIDTKPPEDNTEHGAWKSKLRR
B3H7I9________________MEKEILRQVVDGRESKITFDEFPYYLSEQTRVLLTSAAYVHLKHFDASKYTRNLSPASRAILLSGPAELYQQMLAKALAHFFDAKLLLLDVNDFALKIQSKYGSGNTESSSFKRSPSESALEQLSGLFSSFSILPQREESKA-GGTLRRQSSGVDIKSSSMEGSSNPPKLRRNSSAAANISNLASS----SNQAPLKRSSSWSFDEKLLVQSLYKVLAYVSKANPIVLYLRDVENFLFRSQRTYNLFQKLLQKLSGPVLILGSRIVDLSSEDAQ-EIDEKLSAVFPYNIDIRPPEDETHLVSWKSQLER

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
218		60		40	1.0
265			46	53	1.0
389			80	20	0.995493
390	80			20	0.995493
393	80	20			0.995493
585		28		71	1.0
589			28	71	1.0
593	71	28			1.0
594		28	71		1.0
598		71	28		1.0
599	71	28			1.0
600	71			28	1.0
601	71		28		1.0
602			71	28	1.0
605	71	28			1.0
606	71			28	1.0
729	85	14			0.993533
731			85	14	0.993533
733	85			14	0.993533
735	14			85	0.993533
737		16		83	0.994512
743			83	16	0.994512
744	83		16		0.994512
748	83	16			0.994512
749	83			16	0.994512
823	83		16		0.994512
826	83		16		0.994512
827			83	16	0.994512
828	83		16		0.994512
833			83	16	0.994512
834	83		16		0.994512
835			16	83	0.994512
836		16		83	0.994512
838		83	16		0.994512
844	83	16			0.994512
847		16		83	0.994512
848	16		83		0.994512
853	85		14		0.993533
856		20		70	0.999998
859		22	77		0.999999
860	77		22		0.999999
861		11		88	0.923564
862		11	88		0.923564
863	88			11	0.923564
864	66	22		11	0.999999
865		88	11		0.923564
866	66		11	22	0.999999
867		77		22	0.999999
868		55	22	11	0.999999
869	66		33		1.0
870		88		11	0.923564
871	66	11			0.999999
872	77			22	0.999999
873	66	11	22		0.999999
877	77	22			0.999999
878	55			22	0.999999
879		22	77		0.999999
880	25	75			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain