SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16685

Length: 1935 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16685

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9637	142/184
SustainPine v2.0	sp_v2.0_unigene24134	29/184
SustainPine v2.0	sp_v2.0_unigene26128	1/184
SustainPine v2.0	sp_v2.0_unigene80426	6/184
SustainPine v2.0	sp_v2.0_unigene83335	2/184

Source	Descriptions	Term	Type	Identity
AutoFact	Porin n=1 Tax=Prunus armeniaca RepID=Q9XH72_PRUAR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	regulation of anion transport	GO:0044070	Biological Process	83%
Blast2go	porin activity	GO:0015288	Molecular Function	83%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	83%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	83%
Blast2go	pore complex	GO:0046930	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg: Overlapping hits, possible frame ERROR between 1075 and 1062,

Fln protein: MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYAGVSASIGLTPSPITHFSGAIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWxxxxxxVNLSGEVDTKALHNSAKVGLSLVLKP*

Protein Length: 279

Fln nts: CGTCGTGACCTTGGTGTCCTTGGTTGTCACTCCACACTCCTTTGCAAACTATGTATCGGGTGGCACATATCTTGCTTGCATTCATCGACGGCTGTGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTTGTCTCTCCTAGGGTTTTAAGCAATCTTGGTGGGTTTGTAGAGAGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGGTGTTTTTTTTCTTGGAAAGAAATCGAAGGAATTTAGCC_-_ATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTGAAGGCAATATTTAGCTTTACTGTACCAGATCAAAGATCTGGAAAGGTTGAGCTTCAATATCTGCATGATTATGCAGGGGTCAGTGCAAGCATTGGCTTGACACCATCTCCAATAACACATTTCTCAGGAGCAATTGGAAATGATACTTTTTCTGTAGGGGGTGAAGTTTCGTTTGACACTGCATCGGGAAACTTCTTGAAATATGATGCAGGCTTGAGTTTTTCCAAGCCTGATTTCGTTTCTTCTTTGACCTTAACTGGTAAGGGTGACACCTTGAAGGCATCTTACTTGCATACTGTGAGTCCTCTGACAAAGACTGCTGTTGGAGCAGAGATATCACATAGCTTTTCAAGGAACGAGAATACGTTCACCATAGGCACTCAGCATGCTTTGGACCCACTGACAACAGTTAAGGGGCGCCTCAATAATTATGGAAGGGCAGCTGCAGTACTTCAGCATGAGTGGxxxxxxxxxxxxxxxxxxGTTAATCTTTCTGGTGAGGTGGACACCAAAGCCCTTCACAACAGTGCAAAGGTGGGGCTATCTCTGGTTTTGAAGCCTTGA___AGGATATGCACTATTTGGTACAGATTTAAGCGAAGGTCTGTGCTAAATTTTGATTGGAATTTTTGAGTTTTTCCTTTCAGAATAATTATTTCAATGCCTGTGCTTTCTGTTGAGGCACAGAGCAGCTCAGCACCTTGACTTAATTAGCTATGTAATTTTGTGAGTCAGATGCTGTTAATTTTTTAAGGCACATGCTCTTGAAAATGGGTGTTGCCAAACATGGTTGGCTGGAGCTTCAATCTGGTTGAAAAGTTGTGAAACATTTTTGGTTTTAGGCAATGGTAAGAGTATTTGATGGCAATGCTGAGCTCTTCAGTATTTATCTTCAGTATTTGATATGGTGGGGTTTTGTTCAGGCCCTTCATTTCGTATTATTTCAGCATTTGGACGAAGGCTTAGACCTTCCCATTTTGATTGAATTAATAAGTTGAGGGTGAATAATTTCTGGTAAGTAGTCTTCCTTTTTCTGCAGAAGCCTGACTTGTAATAATATGGTGCCAGACTTTGTGGTTATGTTATCCATTTTTACTGTGGTTCTATTAGATGTGCTGCAATACTTTCATTGCGTTAATGTTTATGTTAAATGCCTGCAATGTAAGCCAGTTAGAAGTAACAGAGTATAGGAAGGATTAGCTAGCTAGAACATCCAAGCAATACAATAAATAAACGTATTCTGGCTTTAGCCTTTTTCCAAGGTTATTAAGATAGCTCTTATGTTAACTGCATTGTGAGGCAGTTTGGGAATTGTGCTATTGGCTGGTAGAGATACATTATTTGG

Fln Alignment:

Contig16685___MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYAGVSASIGLTPSPITHFSGAIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWxxxxxVNLSGEVDTKALHNSAKVGLSLVLKP
A9NU89________________MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNVTTDIKVDTSSNLFATVTIDEPAPGLKTILSFTVPDQRSGKVELQYLHDYAGVSTSIGLTPSPITHFSGVIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRSENTFTIGTQHALDPLTTVKGRLNNYGKAAALLQHEWxxxxxVTLSGEVDTKALHNSAKVGLSLILKP

SNPs (tot: 184)

Position	A %	C %	G %	T %	Probability
11			50	50	1.0
13		50	50		1.0
18	50			50	1.0
23		50		50	1.0
24	50		50		1.0
26		50		50	1.0
27			50	50	1.0
30	50	50			1.0
37	50	50			1.0
64		20	80		0.995493
68	20		80		0.995493
72	80			20	0.995493
74	80		20		0.995493
75			20	80	0.995493
80		20	80		0.995493
81	20	80			0.995493
82		20		80	0.995493
84		20	80		0.995493
85	20	80			0.995493
170		16		83	0.994512
175		83	16		0.994512
176	16			83	0.994512
180	83			16	0.994512
183		16	83		0.994512
185			16	83	0.994512
187		16		83	0.994512
189	83	16			0.994512
190			83	16	0.994512
196			14	85	0.993533
198		14	85		0.993533
202		14	85		0.993533
203		14	85		0.993533
206			14	85	0.993533
208		14		85	0.993533
209	85			14	0.993533
211	85			14	0.993533
212		14	85		0.993533
214			85	14	0.993533
215	85	14			0.993533
216	14		85		0.993533
217		85		14	0.993533
226		14		85	0.993533
227			14	85	0.993533
230		85	14		0.993533
235			85	14	0.993533
239		85		14	0.993533
241		14	85		0.993533
243			85	14	0.993533
252	22			77	0.999999
253			22	77	0.999999
258	85			14	0.999981
260			81	18	0.999994
261		18	81		0.999994
262	18	81			0.999994
264			81	18	0.999994
266		18		81	0.999994
267		18		81	0.999994
268	81			18	0.999994
271		18		81	0.999994
272		81	18		0.999994
273	81		18		0.999994
274	81		18		0.999994
275		18	81		0.999994
276		18	72	9	0.999994
277	81		18		0.999994
278		81	18		0.999994
279	18		81		0.999994
281		18		81	0.999994
285		81		18	0.999994
286			81	18	0.999994
287		18		81	0.999994
293			81	18	0.999994
294	81	18			0.999994
418	83	16			1.0
422			16	83	1.0
424		16	83		1.0
425		16		83	1.0
428		83	16		1.0
429	83		16		1.0
436	83	6			1.0
437	6	93			0.999364
596	91			8	1.0
753		20		80	0.995493
754			20	80	0.995493
756			20	80	0.995493
757	20	80			0.995493
758		20		80	0.995493
759		20	80		0.995493
761	80			20	0.995493
764		20	80		0.995493
765			80	20	0.995493
768		20	80		0.995493
770	80			20	0.995493
771		20	80		0.995493
772	20			80	0.995493
815	71	28			1.0
817			71	28	1.0
819			28	71	1.0
822	87	12			0.992554
823		25	75		1.0
824		25		75	1.0
825			12	87	0.992554
827			37	62	1.0
828	12		25	62	1.0
830		75		25	1.0
831	62		25	12	1.0
832	62			37	1.0
833		25	75		1.0
834	25	62	12		1.0
837		25	75		1.0
840		12		87	0.992554
841	12			87	0.992554
843		11	88		0.923564
844	12			87	0.992554
845		12		87	0.992554
846			12	87	0.992554
847		87		12	0.992554
848			12	87	0.992554
849	12			87	0.992554
851		12		87	0.992554
855	85		14		0.993533
857		85		14	0.993533
858			14	85	0.993533
860	85	14			0.993533
902		12		87	0.992554
906	87			12	0.992554
908	12			87	0.992554
915	87		12		0.992554
917	87			12	0.992554
918	87		12		0.992554
919	87			12	0.992554
920		12	87		0.992554
926	12			87	0.992554
959		12	87		0.992554
960	87		12		0.992554
961	87			12	0.992554
964	87			12	0.992554
967	87	12			0.992554
969	87			12	0.992554
970		87	12		0.992554
1070			80	20	0.995493
1075		66	33		0.997452
1078	16		83		0.999991
1079	16			83	0.999991
1080	16	25	58		1.0
1082		83	16		0.999991
1083		83		16	0.999991
1084	25		8	33	1.0
1085			8	33	1.0
1086			33	66	1.0
1087			33	66	1.0
1088		33		25	1.0
1089			25	75	1.0
1091		25		75	1.0
1092		33		66	1.0
1094	41	33	25		1.0
1097	25			75	1.0
1098		25		75	1.0
1101	25			75	1.0
1507		10		90	0.90298
1508	88		11		0.923564
1510		11	88		0.923564
1514	11		88		0.923564
1515		12	87		0.992554
1516		12	87		0.992554
1519			12	87	0.992554
1520			11	88	0.923564
1521		11	88		0.923564
1526		11	88		0.923564
1527			88	11	0.923564
1528	11	88			0.923564
1529	11	88			0.923564
1544	44		55		1.0
1603			50	50	1.0
1655		25		75	0.996473
1658	75		25		0.996473
1660		25		75	0.996473
1661	75	25			0.996473
1662	75			25	0.996473
1664	75		25		0.996473
1665			25	75	0.996473
1666		25	75		0.996473
1670	25		75		0.996473
1845		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain