SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16642

Length: 682 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16642

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7696	16/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative RING zinc finger protein n=2 Tax=Arabidopsis RepID=Q9SI09_ARATH	-	-	5.0e-16	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	ring u-box domain-containing protein	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	0.0	54%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
148	50	50			1.0
149			50	50	1.0
151		50		50	1.0
153			50	50	1.0
155	50	50			1.0
156		50		50	1.0
159			50	50	1.0
160		50	50		1.0
161		50	50		1.0
352		11		88	0.923564
353	88		11		0.923564
355		11		88	0.923564
356	88		11		0.923564
358			11	88	0.923564
359	11			88	0.923564
360		11		88	0.923564
361	88	11			0.923564
363			87	12	0.992554
370		12		87	0.992554
372			87	12	0.992554
374	12			25	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
402	429	GTACA GTACA GTACA GTACA GTACA GTA	28

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain