SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16632

Length: 3047 nt

UniGene Fasta

>uagpf_v2_unigene16632
CGTCGTGACCTTGGCTGTCACTCAATGTAAAAACTCGCTTATTACCACGTCGTGACCTTGGCTGTCACTCAAGTGTTTTCGGCTCTTACAGAGTAAGATCTGCAGCCTACCGTCGGGACTGCTTGAGGACTCACTAAGCTACAGGACTGTCTGTTTGTTGTATTGTTTTTGGTTGCAATGGCGAGTGGTGGCAAACGTTCACGTTCTAACGATGCTGATCGAAATAGTGAAAGAAAGCGACGGAATCCTGGTGGTCAAAGAGAGACGTTGCCTGGTTTAGATGACACAGTCTACCGCTTGCTATGCCCCGGAGACAAAATTGGAGGTGTCATAGGAAAGGGCGGTAGTATTATCAAGTCCCTGAGGCAAAACACACGTGCCAAGATTAAGGTTGCGGATGGCATTCCAGGGGTTGACGAGAGAGTTATCATCATTTTCAGTTCACCAAAAGATCGGAAGGCGGACCGGGACGATGAAGATGATGATGCTGTATTAGTGGATGGTAAGAGTCCACTTTGTGCTGCTCAAGATGCGCTGTTTAGGGTGTTTGGAAGAATTGTTGAGGAGGGAAGAGGATCTGATGATGAAGACGACGAGTCTGCTAAACAAGCAACTGTTCGCTTATTAGTTCCGAACAATCAAATTGGTTGTCTGCTTGGGAGAGGCGGAAAGGTTATTGAGAAAATGAGAACTGATACTGGTGCACAGATTAAAATTCTACCAAAGGAACAACTGCCCTCTTGCGCCATGGCTACTGATGAGCTTGTTCAGATTGCGGGGGCCTATTCAGTTGTGAAGAAAGCTTTATATGAGGTTTCGTCTAGGCTTCATGAAAATCCTCCCAAAGAGCGACTTCAATTAAACAACCCTGTTACTGCTTTCGGCCATAACCCTTTTCTTTCTTCGGCTGGACAATTGTTTTCCCCGGGGAGCATGTTGTCCCAGGGTACTGCTCCTATTGTTGGCATTGCACCACATATGCCTGCAGTTGGTGGATATAGGAGTGAAGCTAGTGCTGCGTGGCCTCTCAGTTCATCTGGATATCCGGTACTTACTGGTTTGGGTGGTCCTCATAGAAGAGATGATGCTTCTGCGGAAGAGTTTGTATTTCAATTGTTGTGCCGGAATGATAAAATTGGTGGCGTAATAGGAAAAGGTGGTGGTGTGATCAACCAAATTAGACAGGAGACGGGAGCAAATATTAAGGTCCTAGAGCAAGTACCTGATTGTGATGAGCGTGTGATTGTAGTGTCCTCTAAAGAGTATGCCGATGATCGCGTTTCCCCTACTATGGAGGCTGTACTTCAATTGCAATTCAAGGCTAGTGAAAAATCGACGGACGAAGGTAAAGAAGGTGTCATCACTACAAGGTTTCTTGTGCCGTCCATAAATATAGGTTGCCTTTTAGGGAAAGGTGGTAGCATTATTTCCGAAATGCGAAAGAGGACTCGAGCCAACATTCGCATAATGTCAAAAGATAATCTTCCCAAATGTGCTAGCGAAGATGAAGAACTTGTACAGGTTATTGGTGAGGTTGATGTTGCTAGAGATGCTCTAATTCAAATTGCAACAAGGCTCAGGGCAAATGTATTTAAAGACAGTGATGGTGGGGCAACTGCTGGGTCTGTGGTTCCTCCATCTCTCTCTTTATATGGTAGGGGGATTGCTGACTCAGGTTTTGGACGTGGCGATGAGTTGGGATCAACTGGTAGAATGTATTCTCTGTCAAGTTTAGGTTTAGAAGGGACTGGTGCGGGGAGATATTCATCTTATGGTAGCTTGGGAAGCACGAATGGTGCTGGTGGGTATGGATCTCTCTCTAGCTTTTCAACCAGTCGATCTGCAGCTGGGGGTTTACCTGCTGGAGTACCGAAATCTGGATCTACCGTTGAGGTTACAATACCAAATAAATCAGTTGGTTCTATTCTCGGGAGAGGTGGATCAAATATATCTCAAATTCGTGAGATTTCAGGAGCAAAAGTGAAGTTGCATGAATCAAAACCTGGAGGTACAGACCGTGTTGTTGAGATCTCCGGGACACCAGAACAGACACATGCAGCCCAAAGCCTGCTTCAGGCATTTGCAATGTCTGGTCAAAATACACGAACAGCACGTGCTTTATAGAACAGATAGTCTCACATATCAGCTGCGATATATGAAGCCTGGAGCCAGCCCCTTCTTCTCCGCCTCAGCCTAAACTGAAGACCAGATGTGAAGAGCTGTGGAAGCTTTATGGCCTATGTTTTGGCAGCTTTACTTTTAAGCGGACCAACTTTTCTCTACTTATTTCCTATTATATACCAAGCATATTTAAAGCTTATGCACCCTTGACCTGGTGCCTGACTTGAGCTGTTTACAACAAAAATTTGGTACATATGAGGAAGTCTCTAAGATAGCAGGGTATCTTTTGGGAGAGGTCCCGGCCAAGATTCCTTTTCGTAGTTTAAAGCCAGGTGGACCCATGGTATTGATTTTTCTCAAAGTTTGTTGCAGCCTTCAGTTGGATCAGTAGATCTTTAGGTAGCCTAGTCTAGGGAGTTGAAGTGTTAGTTTATGAAGGCTTGAAGTTTTCGTATAGGATATGTGTATTTCCTTGTCCACTGACAACTGGTATTTTTACCTGCATAACTGGTCTACCGAATGATTTTGACTTCCTATGGTTGTAAATGATGAATTGCGATCCTTTTTAATGGACTTTATCCTGTGATCTGTGGGTCTTTTCCATTCTAATCTTCTTCTAAAATGCAATGCCCCATGCCCTTTTGTTGGGGAAGAGAGAACCAATGTTTGTGGATTTTGCTCCAGATATTTATTTTACCGGCCGCCATATTAGATATCAGTTCCTAATTGAATTCGTGCCTGTAGGAGAGAGATTATAGATCTCACTTTTTCTTATTCCTTGACAATTATTTTTTGACAAATCAGCTATTAGTGTATAGGATATGTGTATTTCCTTGTCCATTGACAACTGGTATTTTTACCTGCATAACTGGTCTACCGAATGATTTTGACTTCCTATGGTTGTAAATGATGAATTGCGAATAACC

Ace file of the UniGene uagpf_v2_unigene16632

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18403	114/198
SustainPine v2.0	sp_v2.0_unigene25678	70/198
SustainPine v2.0	sp_v2.0_unigene77788	2/198
SustainPine v2.0	sp_v2.0_unigene79067	1/198

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding KH domain-containing protein [Arabidopsis thaliana] ref\|NP_197031.3\| RNA-binding KH domain-containing protein [Arabidopsis thaliana] dbj\|BAF00580.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAF01176.1\| hypothetical protein [Arabidopsis	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	kh domain-containing protein at4g18375-like	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABA1

Fln msg: your sequence is longer than subject: 649 - 340

Fln protein: MASGGKRSRSNDADRNSERKRRNPGGQRETLPGLDDTVYRLLCPGDKIGGVIGKGGSIIKSLRQNTRAKIKVADGIPGVDERVIIIFSSPKDRKADRDDEDDDAVLVDGKSPLCAAQDALFRVFGRIVEEGRGSDDEDDESAKQATVRLLVPNNQIGCLLGRGGKVIEKMRTDTGAQIKILPKEQLPSCAMATDELVQIAGAYSVVKKALYEVSSRLHENPPKERLQLNNPVTAFGHNPFLSSAGQLFSPGSMLSQGTAPIVGIAPHMPAVGGYRSEASAAWPLSSSGYPVLTGLGGPHRRDDASAEEFVFQLLCRNDKIGGVIGKGGGVINQIRQETGANIKVLEQVPDCDERVIVVSSKEYADDRVSPTMEAVLQLQFKASEKSTDEGKEGVITTRFLVPSINIGCLLGKGGSIISEMRKRTRANIRIMSKDNLPKCASEDEELVQVIGEVDVARDALIQIATRLRANVFKDSDGGATAGSVVPPSLSLYGRGIADSGFGRGDELGSTGRMYSLSSLGLEGTGAGRYSSYGSLGSTNGAGGYGSLSSFSTSRSAAGGLPAGVPKSGSTVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEISGTPEQTHAAQSLLQAFAMSGQNTRTARAL*

Protein Length: 650

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTAAAAACTCGCTTATTACCACGTCGTGACCTTGGCTGTCACTCAAGTGTTTTCGGCTCTTACAGAGTAAGATCTGCAGCCTACCGTCGGGACTGCTTGAGGACTCACTAAGCTACAGGACTGTCTGTTTGTTGTATTGTTTTTGGTTGCA_-_ATGGCGAGTGGTGGCAAACGTTCACGTTCTAACGATGCTGATCGAAATAGTGAAAGAAAGCGACGGAATCCTGGTGGTCAAAGAGAGACGTTGCCTGGTTTAGATGACACAGTCTACCGCTTGCTATGCCCCGGAGACAAAATTGGAGGTGTCATAGGAAAGGGCGGTAGTATTATCAAGTCCCTGAGGCAAAACACACGTGCCAAGATTAAGGTTGCGGATGGCATTCCAGGGGTTGACGAGAGAGTTATCATCATTTTCAGTTCACCAAAAGATCGGAAGGCGGACCGGGACGATGAAGATGATGATGCTGTATTAGTGGATGGTAAGAGTCCACTTTGTGCTGCTCAAGATGCGCTGTTTAGGGTGTTTGGAAGAATTGTTGAGGAGGGAAGAGGATCTGATGATGAAGACGACGAGTCTGCTAAACAAGCAACTGTTCGCTTATTAGTTCCGAACAATCAAATTGGTTGTCTGCTTGGGAGAGGCGGAAAGGTTATTGAGAAAATGAGAACTGATACTGGTGCACAGATTAAAATTCTACCAAAGGAACAACTGCCCTCTTGCGCCATGGCTACTGATGAGCTTGTTCAGATTGCGGGGGCCTATTCAGTTGTGAAGAAAGCTTTATATGAGGTTTCGTCTAGGCTTCATGAAAATCCTCCCAAAGAGCGACTTCAATTAAACAACCCTGTTACTGCTTTCGGCCATAACCCTTTTCTTTCTTCGGCTGGACAATTGTTTTCCCCGGGGAGCATGTTGTCCCAGGGTACTGCTCCTATTGTTGGCATTGCACCACATATGCCTGCAGTTGGTGGATATAGGAGTGAAGCTAGTGCTGCGTGGCCTCTCAGTTCATCTGGATATCCGGTACTTACTGGTTTGGGTGGTCCTCATAGAAGAGATGATGCTTCTGCGGAAGAGTTTGTATTTCAATTGTTGTGCCGGAATGATAAAATTGGTGGCGTAATAGGAAAAGGTGGTGGTGTGATCAACCAAATTAGACAGGAGACGGGAGCAAATATTAAGGTCCTAGAGCAAGTACCTGATTGTGATGAGCGTGTGATTGTAGTGTCCTCTAAAGAGTATGCCGATGATCGCGTTTCCCCTACTATGGAGGCTGTACTTCAATTGCAATTCAAGGCTAGTGAAAAATCGACGGACGAAGGTAAAGAAGGTGTCATCACTACAAGGTTTCTTGTGCCGTCCATAAATATAGGTTGCCTTTTAGGGAAAGGTGGTAGCATTATTTCCGAAATGCGAAAGAGGACTCGAGCCAACATTCGCATAATGTCAAAAGATAATCTTCCCAAATGTGCTAGCGAAGATGAAGAACTTGTACAGGTTATTGGTGAGGTTGATGTTGCTAGAGATGCTCTAATTCAAATTGCAACAAGGCTCAGGGCAAATGTATTTAAAGACAGTGATGGTGGGGCAACTGCTGGGTCTGTGGTTCCTCCATCTCTCTCTTTATATGGTAGGGGGATTGCTGACTCAGGTTTTGGACGTGGCGATGAGTTGGGATCAACTGGTAGAATGTATTCTCTGTCAAGTTTAGGTTTAGAAGGGACTGGTGCGGGGAGATATTCATCTTATGGTAGCTTGGGAAGCACGAATGGTGCTGGTGGGTATGGATCTCTCTCTAGCTTTTCAACCAGTCGATCTGCAGCTGGGGGTTTACCTGCTGGAGTACCGAAATCTGGATCTACCGTTGAGGTTACAATACCAAATAAATCAGTTGGTTCTATTCTCGGGAGAGGTGGATCAAATATATCTCAAATTCGTGAGATTTCAGGAGCAAAAGTGAAGTTGCATGAATCAAAACCTGGAGGTACAGACCGTGTTGTTGAGATCTCCGGGACACCAGAACAGACACATGCAGCCCAAAGCCTGCTTCAGGCATTTGCAATGTCTGGTCAAAATACACGAACAGCACGTGCTTTATAG___AACAGATAGTCTCACATATCAGCTGCGATATATGAAGCCTGGAGCCAGCCCCTTCTTCTCCGCCTCAGCCTAAACTGAAGACCAGATGTGAAGAGCTGTGGAAGCTTTATGGCCTATGTTTTGGCAGCTTTACTTTTAAGCGGACCAACTTTTCTCTACTTATTTCCTATTATATACCAAGCATATTTAAAGCTTATGCACCCTTGACCTGGTGCCTGACTTGAGCTGTTTACAACAAAAATTTGGTACATATGAGGAAGTCTCTAAGATAGCAGGGTATCTTTTGGGAGAGGTCCCGGCCAAGATTCCTTTTCGTAGTTTAAAGCCAGGTGGACCCATGGTATTGATTTTTCTCAAAGTTTGTTGCAGCCTTCAGTTGGATCAGTAGATCTTTAGGTAGCCTAGTCTAGGGAGTTGAAGTGTTAGTTTATGAAGGCTTGAAGTTTTCGTATAGGATATGTGTATTTCCTTGTCCACTGACAACTGGTATTTTTACCTGCATAACTGGTCTACCGAATGATTTTGACTTCCTATGGTTGTAAATGATGAATTGCGATCCTTTTTAATGGACTTTATCCTGTGATCTGTGGGTCTTTTCCATTCTAATCTTCTTCTAAAATGCAATGCCCCATGCCCTTTTGTTGGGGAAGAGAGAACCAATGTTTGTGGATTTTGCTCCAGATATTTATTTTACCGGCCGCCATATTAGATATCAGTTCCTAATTGAATTCGTGCCTGTAGGAGAGAGATTATAGATCTCACTTTTTCTTATTCCTTGACAATTATTTTTTGACAAATCAGCTATTAGTGTATAGGATATGTGTATTTCCTTGTCCATTGACAACTGGTATTTTTACCTGCATAACTGGTCTACCGAATGATTTTGACTTCCTATGGTTGTAAATGATGAATTGCGAATAACC

Fln Alignment:

Contig16632___LRQNTRAKIKVADGIPGVDERVIIIFSSPXXXXXXXXXXXXXXXXXXGKSPLCAAQDALFRVFGRIVXXXXXXXXXXXXXAKQA--TVRLLVPNNQIGCLLGRGGKVIEKMRTDTGAQIKILPKEQLPSCAMATDELVQIAGAYSVVKKALYEVSSRLHENPPKERLQLNN----------------PVTAFGHNPFLSSAGQLFSPGSMLSQGTAPIVGIAPHMPAVGGYRSEASAAWPLSSSGYPVLTGLGGPHRRDDASAEEFVFQLLCRNDXXXXXXXXXXXXXNQIRQETGANIKVLEQVPDCDERVIVVS
D5ABA1________________IRQETGANIKVIDQVPDCDERVIVVSSKEF------------------------VDDRISPTLEAVLHLQFKTSEKSIEEGKEGVITTRFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAGENEELVQVIGEVDVAREALIQIATRLRSNVFKDQDGGSNAGSVVPPSLSLYGRGVPDSGFGRGDELGSTGRMYSLPSLGLEGTASGRYSSASYGSLGGVQNGGAGGYGSFSSFSTSRAPAGGLPAGVAKSGS--TVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEIS

SNPs (tot: 162)

Position	A %	C %	G %	T %	Probability
63		25		75	1.0
68		78	21		1.0
71	35	14	28	14	1.0
73			50	7	1.0
74		35		50	1.0
75	7	28	64		1.0
78			28	71	1.0
79			28	71	1.0
83			71	28	1.0
85	28			71	1.0
88		28		71	1.0
154	3	7	88		0.998862
157			7	92	0.999664
159	4	8		88	0.999262
167	4			88	0.999262
365	93	6			0.999153
367			93	6	0.999364
369	92		7		0.999532
370	92			7	0.999532
371	92		7		0.999532
376	92			7	0.999532
493	81	18			1.0
494			18	81	1.0
496	81	18			1.0
502		18		81	1.0
503		20	80		1.0
504			80	20	1.0
506	80		20		1.0
507	80		20		1.0
508		20	80		1.0
509	80			20	1.0
514	78			21	1.0
554	81	12		6	0.999943
556	81			12	0.999943
557	81	12	6		0.999943
558		6	12	81	0.999943
561		25		75	1.0
562		20		80	1.0
563	6		80	13	0.999961
564	80	6		13	0.999961
567	86	13			0.999973
568			86	13	0.999973
570			86	13	0.999973
571	86	13			0.999973
573		13	86		0.999973
574	86			13	0.999973
575		13	86		0.999973
576	13		86		0.999973
756	86		13		0.999973
768	5	11	83		0.999887
769		5	11	83	0.999887
772	88			11	0.999937
775		11		88	0.999937
776		11		88	0.999937
777			88	11	0.999937
778		88		11	0.999937
781		12	87		0.999964
782			87	12	0.999964
784		87		12	0.999964
788		12		87	0.999964
1080	75	25			1.0
1082	75			25	1.0
1083		25	75		1.0
1084	75		25		1.0
1089		25	75		1.0
1097	25		75		1.0
1098		25	75		1.0
1099	75			25	1.0
1100	75	25			1.0
1101	26		73		1.0
1164		10	90		0.90298
1166		10		90	0.90298
1177	90		10		0.90298
1178	90			10	0.90298
1179	90	10			0.90298
1180			10	90	0.90298
1182	75	16			0.99999
1184	83			16	0.999991
1186	75		16		0.99999
1187		8	75	16	0.99999
1190		16	83		0.999991
1191	75		8	16	0.99999
1192		83		16	0.999991
1195		18	72	9	0.999994
1196	72	9		18	0.999994
1200	72	9		18	0.999994
1201	81	18			0.999994
1202	18			81	0.999994
1299			89	10	0.999919
1506		12	87		0.999964
1692			83	16	0.994512
1693	83			16	0.994512
1694		16		83	0.994512
1696	83	16			0.994512
1902	80			20	0.995493
1904	80		20		0.995493
1905		83	16		0.994512
1906		83	16		0.994512
1907	66			16	0.988813
1908	66	16		16	0.988813
1909	66		33		1.0
1911	83	16			0.994512
1912	83	16			0.994512
1913	66	33			1.0
1915		83		16	0.994512
1916	83		16		0.994512
1920		16	83		0.994512
1921	16		83		0.994512
1922		16		83	0.994512
1935	87	12			0.992554
1937	87			12	0.992554
1938		12	87		0.992554
1939		12	87		0.992554
1942		12	87		0.992554
1943	75	12		12	0.975346
1945		87		12	0.992554
1946	75		25		1.0
1947	75	12	12		0.975346
1948	85	14			0.993533
1950	85		14		0.993533
1952	85	14			0.993533
1953	14			85	0.993533
1958	85			14	0.993533
2027		20		80	0.995493
2056	88		11		0.923564
2058		11	88		0.923564
2059		88	11		0.923564
2060	88			11	0.923564
2062	11	88			0.923564
2066	88			11	0.923564
2067	88			11	0.923564
2069		88	11		0.923564
2074		11		88	0.923564
2149	12	87			0.992554
2152		87	12		0.992554
2154	87	12			0.992554
2155		12		87	0.992554
2158	87			12	0.992554
2287			10	90	0.90298
2289	90	10			0.90298
2290			10	90	0.90298
2292			10	90	0.90298
2293	10	90			0.90298
2296	79	12	8		1.0
2297			8	91	0.999766
2298			8	91	0.999766
2299	87	8	4		0.999414
2300		8	12	79	1.0
2301	79	12		8	1.0
2302			8	91	0.999766
2303	87		4	8	0.999414
2304		87	8	4	0.999414
2305		91	8		0.999766
2306	83			16	1.0
2307	79	4	16		1.0
2308			87	12	1.0
2310	83	8	4		0.998844
2314	8			91	0.999766
2463	3	90		6	0.997544
2468	6		93		0.999264
2478			6	93	0.999153
2825	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain