SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16520

Length: 843 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16520

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17063	65/66

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE	-	-	1.99993e-41	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	90%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	90%
Blast2go		GO:0080137	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase, dimerisation	IPR011261	-	0.0	-
Sma3	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	IPR008193	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
103	66			33	0.997452
104	66	33			0.997452
109		33	66		0.997452
110	33	66			0.997452
141	81		18		0.999994
144	81	18			0.999994
145	83		16		0.999991
150		84		15	0.999986
151		76	7	15	0.999983
152	76		15	7	0.999983
154	84	15			0.999986
156		76		7	0.999983
158	76		7	15	0.999983
159		23		76	1.0
162		23	76		1.0
164		7	76		0.999983
197	57		42		1.0
213	83		16		1.0
215		16	83		1.0
216	83		16		1.0
217	83			16	1.0
220		16		83	1.0
221		16		83	1.0
222	83			16	1.0
225	83		16		1.0
226	83	16			1.0
229		83		16	1.0
230		16		83	1.0
231	16		83		1.0
233	83			16	1.0
234	83	16			1.0
235	16	83			1.0
286	90			9	0.999872
287	90	9			0.999872
288			9	90	0.999872
291	9	90			0.999872
292	90	9			0.999872
294	90			9	0.999872
295			90	9	0.999872
298	90	9			0.999872
300		85	4	9	0.999726
470	90		10		0.90298
484	90	10			0.90298
485	90			10	0.90298
486	90		10		0.90298
487	90			10	0.90298
489	10	90			0.90298
490		10	90		0.90298
491	87			12	0.992554
492		12	87		0.992554
528		14		85	0.993533
564			58	41	1.0
608		55		45	1.0
628			72	27	1.0
631	30		70		1.0
650	62		37		1.0
676	37			62	1.0
716		28		71	1.0
740	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain