SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16483

Length: 1297 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16483

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15320	59/83
SustainPine v2.0	sp_v2.0_unigene60271	20/83

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NLD0_PICSI	-	-	88%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	peptidyl-prolyl cis-trans	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLD0

Fln msg:

Fln protein: MSAASLSADMAIRGTILGKTALHVLGPQVVSQCRQSVMFKCPPHTLRKMRFSAQDLQAKNFYSGFTPFKSVFTSTSKRSWQAGSARAMSQDAAFQSKVTTKCFLDIEIGGDPAGRIVLGLFGEDVPKTAENFRALCTGEKGFGYKGSSFHRIIKDFSRQGGDFDRGDGTGGKSIYGRTFEDENFKLAHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDKRHVVFGQVIEGMEIVKKLESEETNRTDRPKRPCRIVDCGELP*

Protein Length: 264

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTAACACATTATCCATTTACGGGACAGGGTAAGCAGCA_-_ATGTCGGCCGCATCACTTTCTGCAGACATGGCGATCCGTGGCACTATTCTGGGGAAGACAGCATTACATGTTTTGGGACCTCAGGTTGTATCCCAATGTCGCCAGTCAGTGATGTTCAAATGTCCACCCCATACTCTCAGGAAGATGAGGTTTTCTGCTCAAGATTTGCAAGCAAAAAATTTCTATTCAGGATTCACACCATTTAAATCAGTTTTTACTTCTACTTCAAAAAGGAGTTGGCAAGCAGGTTCTGCCAGAGCTATGTCACAGGATGCCGCATTTCAGTCAAAGGTGACAACTAAGTGCTTTTTGGACATTGAAATTGGAGGAGATCCTGCAGGAAGGATTGTGCTTGGACTTTTTGGTGAGGATGTACCAAAAACAGCTGAGAATTTCCGCGCACTATGTACAGGAGAGAAAGGGTTTGGATACAAAGGATCTTCATTTCACCGAATCATAAAAGATTTTAGCCGTCAGGGTGGAGACTTTGACAGGGGAGATGGTACAGGAGGAAAGAGCATATATGGTCGCACTTTTGAAGACGAGAACTTCAAATTAGCCCATGTTGGACCTGGAGTTCTAAGTATGGCTAATGCTGGCCCCAACACAAATGGCAGCCAATTTTTTATATGTACAGTCAAAACACCATGGTTGGATAAACGCCACGTTGTGTTTGGACAAGTTATTGAGGGGATGGAGATTGTTAAGAAACTCGAGTCGGAAGAAACAAATCGTACAGATCGGCCAAAAAGGCCCTGCAGAATTGTTGATTGTGGGGAGCTTCCCTGA___AGTTGCTGAGACAGAGGCTTTAATTGTTTCAATTGAGTGATCATCTGAAAATAATTTTGTTTCGTCTGAAAAGAGGCTTTAATTATCACAGTTTTATTCCGGCTATCTTGATCATTCACGGAAGTCCCGAGAGTCAATTTGCCAAGTATTCCTAATAAACTCTATTGCTCTCAGAATTTATTTAAATGCCTTTAATGGGTGCAATGTAATAGTCTTATTATGAGTCAATATGAACTGTTAGGGTAATGCCACGAGGTGCTTTCACGGGGATACTACTTACTGATGTGTAACAAGGAAAGCTCACATATGAAGCATTTAAAAAAAACATTTATTTTGTGTGTTTTATTCAGCATGCCAAAAGTTATTTCACATAGTAGCTTCTTGTAGGATTTATAAGAATAATTTGATATATTGTTGACTAGTACAAGGACCAGGGTATGCTAC

Fln Alignment:

Contig16483___IRGTILGKTALHVLGPQVVSQCRQSVMFKCPPHTLRKMRFSAQDLQAKNFYSGFTPFKSVFTSTSKRSWQAGSARAMSQDAAFQSKVTTKCFLDIEIGGDPAGRIVLGLFGEDVPKTAENFRALCTGEKGFGYKGSSFHRIIKDFSRQXXXXXXXXXXXXKSIYGRTFEDENFKLAHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDKRHVVFGQVIEGMEIVKKLESEETNRTDRPKRPCRIVDCGELP
A9NLD0________________IRGTILGKTALHVLGPQVVSQCRQSVMFKCPPHTLKTMR-SSQNLQSKNFYSGFTPFKSVFISTSKRSWQTGSARAMSQDAAFQSKVTSKCFFDIEIGGAPAGRIVLGLFGEDVPKTTENFRALCTGEKGFGYKGSSFHRIIKDFMLQGGDFDREDGTGGKSIYGRTFEDENFKLTHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDKRHVVFGHVIEGLDVVKKLESEETNRTDRPKKPCRIVDCGELP

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
341		66		33	1.0
365			10	90	0.90298
366	90			10	0.90298
367	90	10			0.90298
374			11	88	0.923564
375			11	88	0.923564
376		11		88	0.923564
377			88	11	0.923564
379	88			11	0.923564
382		11		88	0.923564
385	88	11			0.923564
469			14	85	0.993533
470	85			14	0.993533
471		14		85	0.993533
476	85			14	0.993533
479	85	14			0.993533
480			85	14	0.993533
481	85		14		0.993533
482			83	16	0.994512
483	83	16			0.994512
485	83	16			0.994512
486			83	16	0.994512
487		16	83		0.994512
488	16		83		0.994512
523	71		28		1.0
525	85		14		0.993533
526	71	14		14	0.984337
527	71		14	14	0.984337
528	85			14	0.993533
529		14	85		0.993533
530	71	14	14		0.984337
531		28		71	1.0
532			14	85	0.993533
533			28	71	1.0
534		14	14	71	0.984337
535	57	28	14		1.0
536	14			85	0.993533
537		14	85		0.993533
538	14			28	1.0
540	28	14			1.0
541		14		85	0.993533
544	85			14	0.993533
546			85	14	0.993533
547		14	85		0.993533
548	14			85	0.993533
549		14	85		0.993533
550			85	14	0.993533
551	85	14			0.993533
552	14		85		0.993533
716	89		10		0.999919
717		89		10	0.999919
719	89		10		0.999919
722		10	89		0.999919
727	89	10			0.999919
815			86	13	1.0
817		86	10	3	1.0
818	89			10	1.0
819	86	3	10		1.0
821	86	10		3	1.0
822	86	10		3	1.0
823			89	10	1.0
824			89	10	1.0
825		89	10		1.0
826		86	10	3	1.0
832		7	85	7	0.996721
833	92	7			0.999602
846		7	92		0.999602
848			92	7	0.999602
1184	33			66	0.997452
1185	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain