SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16482

Length: 1001 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16482

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22890	76/77

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENT domain containing protein	-	-	5.0e-07	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Tudor-like, plant	IPR014002	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 265 - 359

Fln protein: RRDLGCHSGLKHFIV*FFW*SALAKLDQFGFLFIRIGEMTSGLKLGAEDRGFNEFSPIPFGLFTEDVENISLESAKSSTHADKNGSETRVSELLGESKADGHSGNLKVVGGQLASKSSKRKLETKDQSHYDSSCKRKFPTEKDLKGTGDKELYESHVGSQKRDLHKDLGFPAEDEAITICLPYIQYLCDQNRCSPGNTPVIRGKTSLKQMQLMAYRTVLKALYLQKTLTLKWKDEILLTDLRDLLHISNAEHAKALKCIMSIHY*

Protein Length: 266

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTGAAACACTTCATAGTATGATTCTTCTGGTAGTCTGCTTTGGCGAAGCTTGACCAGTTTGGGTTTTTGTTCATAAGGATTGGAGAGATGACAAGTGGGTTAAAGCTTGGGGCAGAGGATAGGGGATTCAATGAATTCAGTCCAATCCCTTTTGGACTCTTTACTGAAGATGTGGAGAATATTAGTTTGGAATCAGCGAAAAGCTCTACTCATGCTGATAAAAATGGAAGTGAAACTAGGGTTTCAGAACTTTTAGGAGAATCTAAGGCAGATGGGCACTCTGGTAACCTGAAAGTTGTAGGTGGTCAGCTGGCGAGTAAATCTTCTAAGAGAAAGTTGGAAACTAAGGATCAGTCCCATTATGATTCTTCCTGCAAAAGGAAATTCCCAACTGAAAAAGACTTGAAGGGTACAGGGGATAAAGAGCTTTATGAGTCCCATGTTGGGAGCCAGAAAAGAGATCTGCATAAAGATCTTGGATTCCCTGCCGAAGATGAAGCCATTACAATCTGTCTACCCTACATACAGTATCTGTGTGACCAAAATAGATGTTCTCCTGGCAATACCCCTGTAATAAGGGGAAAGACAAGTTTAAAACAGATGCAGTTGATGGCTTATCGTACCGTACTCAAGGCATTATATCTCCAAAAGACTCTGACTCTTAAATGGAAAGATGAAATTCTCCTTACAGACCTTCGGGATTTGCTGCACATAAGCAATGCAGAGCATGCAAAGGCGCTGAAGTGTATAATGTCTATTCATTATTAA___CTAGGAGTGTCATAAACTCTGGGGAATATAGTTGGGTTCTCTTTTATAATCAGGCCAGATTTGAAGAATACAATAGCTTCTGCTCTTTACATTTTGTCAGATTTGAAGAAGACAATATCTTCGGCTCCTTACATTTTGTCTTATTATACAACAGTATGATTTCTATGGACAAATTCAGGATTAATGGAGTTTATTGGTTTAATTTT

Fln Alignment:

Contig16482___AEDRGFNEFSPIPFGLFTEDVENISLESAKSSTHADKNGSETRVSELLGESKADGHSGNLKVVGGQLASKSSKRKLETKDQSHYDSSCKRKFPTEKDLKGT---GDKELYESHVGSQKRDLHKDLGFPAEDE-AITICLPYIQYLCDQNRCSPGNTPVIRGKTSLKQMQLMAYRTVLKALYLQKTLTLKWKDEILLTDLRDLLHISNAEHAKALKCIMSIHY
B8LQA9________________SENMGIKEPNPKCPLLSAGDVENIPSKSVKRSNKTNEKRSEVKVSESSGECKADRQCETLKDGCSQPTKKSSKRKQGTKDQSNNGSACRRKILSEENVDGTETHDEENIPNFHVKVVKRAPLKDLSSPTESENTFTISIPYLE-IVDQNICHPGNTSEIHGKVTLKQMYLLAYHFVLKALYLQG--AHNWKLETLLTDLREVLHINNEEHANELRCITSGQY

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
113	90			10	0.999898
114		10	90		0.999898
313	92		8		0.999718
373	91	8			0.999766
374	91		8		0.999766
375			91	8	0.999766
378		8		91	0.999766
380	91			8	0.999766
381			91	8	0.999766
382			8	91	0.999766
383		90	9		0.999842
385		90		9	0.999842
386	86		9		0.999642
388		9		90	0.999842
391		9	90		0.999842
417	85		14		0.999981
418	85			14	0.999981
423	78	14	7		0.999974
424	78	21			1.0
425	84			15	0.999986
426	84			15	0.999986
428	76		15		0.999983
432		15	84		0.999986
434	64	35			1.0
437		29	70		1.0
443	76	23			1.0
444			75	25	1.0
445			87	12	0.999964
447		12	87		0.999964
448	75	12		12	0.999931
449			12	87	0.999964
450	75			12	0.999931
451	75	12	12		0.999931
452	87			12	0.999964
453		25	75		1.0
454	86			13	0.999973
455		13	73		0.999956
456	13	86			0.999973
458		13		86	0.999973
459	13			86	0.999973
477	88	11			0.999952
480		88	11		0.999952
481	88			11	0.999952
484	88	11			0.999952
485	88	11			0.999952
486	88			11	0.999952
487			88	11	0.999952
488	88		11		0.999952
490	88	11			0.999952
492		88	11		0.999952
527	90			10	0.999898
586		85	14		1.0
588		14	85		1.0
590		85		15	1.0
591	85		15		1.0
593		15		85	1.0
594	85	15			1.0
595		85		15	1.0
596		85	15		1.0
597		85	15		1.0
603	80	20			1.0
605	85	15			1.0
608		6	90		0.997544
610			93	6	0.999264
611	93	6			0.999364
612	93		6		0.999453
613	93			6	0.999453
618	92	7			0.999532
619			92	7	0.999602
621			7	92	0.999602
622			7	92	0.999602
623	88	7			0.998862
624	92			7	0.999602
625	92		7		0.999602
626	92			7	0.999602
630	92	7			0.999602
632		7	92		0.999602
633	7	92			0.999664

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain