SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16479

Length: 1363 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16479

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16197	70/87
SustainPine v2.0	sp_v2.0_unigene60988	6/87
SustainPine v2.0	sp_v2.0_unigene61679	6/87

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell wall hydrolase (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJR2_HYAOR	-	-	5.0e-16	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	0.0	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK98

Fln msg:

Fln protein: MADGKKPNDKSGGKDDGKKDAVVATSAGFVVFTGIALSLFKALWPKKPVEESFISEEGVSVSSTENTFEDLKEKASEVPKAANGVAYDVGKKFQKGGGKKKSSQTIEIYKGDTLWGLSRKYGVSVEAIKAANGFTDDTIYAGEKLILP*

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCGACCTCAGGGTTTTGCCATAAAATGAACGTCGTGACCTTGGCTGTCACTCAGAATATTCTTGCAGATTCGATTGCGATTATAGTCAAAGCATCTGATACATTATGGTCGATACACAGTAAACCTTGTTCATGCTTCCGCAAGGGTCTTTCTGAGCTCCGTTTGGGTTGTGTTTGCTTAGCGATCAAGTTCCAGGAAGCCTTTGGATCGATGCAGGGTAGGGTTTGAAAAACAATTCGGTGCATTATTCTATGGCCTTGCATTTTGTGGACTGAACGTAGAATTGCACGGTTTACGGCGGCTCGGCTCGGCTCGGCTCGGGTTTCATCAAGAAGTAAACA_-_ATGGCAGACGGTAAGAAACCAAATGACAAATCTGGCGGCAAGGATGACGGTAAGAAGGATGCTGTAGTTGCAACAAGTGCAGGTTTTGTTGTCTTCACTGGGATAGCTTTGAGCCTCTTCAAGGCCCTGTGGCCGAAAAAACCTGTAGAAGAATCGTTTATTTCCGAGGAGGGTGTCTCAGTCAGTTCTACCGAGAATACCTTTGAAGACCTGAAGGAGAAAGCTAGTGAAGTGCCAAAAGCAGCAAATGGTGTTGCCTATGATGTCGGTAAGAAGTTTCAGAAAGGGGGTGGAAAGAAGAAATCAAGCCAAACTATTGAGATATATAAAGGAGACACTCTGTGGGGACTATCTCGAAAGTATGGGGTTTCAGTTGAAGCAATCAAAGCTGCAAATGGGTTTACAGATGATACCATCTATGCTGGAGAGAAACTTATACTACCCTGA___TGGGCTTATTGGTTGTGCTTGACATAACCAATTATGACTTTTCAGTTTCTCTTTTGTAGTTGTGAGGCCTGTCAGCTTGAGATTTAGAGTGAATAAAGTGTCCATCACTATCAGCGCATAGCTTGTTGAAACATTAAAAATCAGTTTTGAAGGCTATTTCATGTGTATTGCTTCTCCTTGCAGATTGCTATTTTCATCATGACCCAGACATGTTCATTTTTGAGTCTTCGAGTTTCTTCTTAAAATCAATTGTTAGATTTTCAAGTTTGACTTATTTGGTTGACATTGGATCGCTTGTTCTGGAATATATGTAGTACAATTCAAGTGAGTTATATTTTACTTTGCATACTCTTGAAAATGAGATGTTCAACACATGTAAGATGGCCCTTTTGGGAAGATAGCTGTTTACATATCTTCCTAATCAACGGAAAACTGAACAAACATGAAAATATGCCATTTTTTACATGCAATAGTTGCCGGGGACTTGTAAATCTAAATGATCAGGTTTATTCTGTTCTCAGCTGTCATATATTCTTACCTCTAGTTATCC

Fln Alignment:

Contig16479___AVVATSAGFVVFTGIALSLFKALWPKKPVEESFISEEGVSVSSTENTFEDLKEKASEVPKAANGVAYDVXXXXXXXXXXXXSSQTIEIYKGDTLWGLSRKYGVSVEAIKAANGFTDDTIYAGEKLILP
A9NK98________________AVVATSAGFVVFTGIALSLFKALWPKKPVEESFISEEAVSTTSTENIFEDLKEKASEVPKAANGVAYDVGKKFQKGGGKKKSNQTIEIFKGDTLWGLSRKYGVSVEAIKAANGFSDDTIYAGEKLILP

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
55		83		16	0.994512
58	14	71		14	0.984337
59		14	71	14	0.984337
60	14	14		71	0.984337
63	14	85			0.993533
64	14	85			0.993533
65			14	85	0.993533
66	14			85	0.993533
68	14		85		0.993533
69		85		14	0.993533
72	14			85	0.993533
73	14	85			0.993533
74	85		14		0.993533
78	85			14	0.993533
294		6	93		0.999453
296	93			6	0.999453
356	62		37		1.0
450		29		70	1.0
522	11		88		0.999952
534			86	13	0.999973
537		13	86		0.999973
539		13	86		0.999973
609	82	5		11	0.999919
672	30		70		1.0
844	88	5	5		0.988099
845			5	94	0.998894
846		5		94	0.998894
847	91	5	2		0.995912
854			9	90	1.0
855			9	90	1.0
857	90			9	1.0
860		9		90	1.0
861	5			94	0.998578
862		88		11	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
324	346	CGGCT CGGCT CGGCT CGGCT CGG	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain