SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16447

Length: 2276 nt

UniGene Fasta

>uagpf_v2_unigene16447
CGTCGTGACCTTGGCTGTCACTCAATATATCGTCGTGACCTTGGCTGTCACTCAGTGATTTCTCTGCTACATTCAGTGTAGCATACAGGCCCTCTAGATTTCCTGCAGCCATGGCGACCGCGAAGCTTATGATCTTCGTTTTCATGACTCTTGTGCTCTCTGTAAATTTCCAGCGTCTCCAGGCCGTTGAAAATGACACCGAACTCGACGAGATCGAGGAACTGGAGCTCCTGGAAGACGAGGCTGAAGAAAAGACAACGGGTGCTTTCACGGCTGGAGAGGAAATAGAACCAGAAGAGGACTTCGATGAAGGATCGTACGACCTGGAAGGTGAAGATGCGGATTCCGGTGCGCCGGCTGTCGACGAGAAAGACGTCTTGGTTTTGAAGGAGAGCAACTTCAGCGATGTCGTGAGCAAAAACCGTTATGTTCTGGTCGAGTTTTATGCGCCGTGGTGCGGGCATTGCCAGCACTTGGCTCCAGAGTATGCTGCTGCTGCGACTGAGTTGAAGGGGGAAGTCATTCTGGCTAAAGTGGACGCCACGGAAGAAAATGATCTGGCGCAAAAATTCGAAGTGCAGGGGTTTCCGACCATCTTCTTCTTCATCGATGGAGTTCACAAGCAGTATACAGGCCAAAGAACAAAAGAAGGAATTGTTAGTTGGATCAAGCGAAAAACTGGACCTGCGGTATCTGTTCTCATCACAACAGAGGATGCAGAAACTCTATTGGACTCGGGAACCACAGCTGCTGTTGGTTTGTTTGACTCATTAGAGGGCACTGAAAATAAGGAGTTTGAAGCAGCGTCCAGGCAAGAAGATGACGTGCTCTTTTATCAAACAACTAGTGAACGCGTAGCCGCTGTTCTTGGCATTAACACAAAGGCAAAGCGGCCAGCATTGGTACTTTTGAAGAAGGAGCCTGAAAAAATATCCCATTTTGATGGAAAATTTGAGAAAGCTGCCGTAACTGAGTTCGTCTTTGCAAACAAGCTCCCATTAGTTACGACTTTCACCAGGGAAAGTGCTAATATGATATTTGACAGTTCTATAAAGAAACAAATCCTGCTCTTCGTAACTGCCAAGGATTATGAAAAGGTCATTCCATCATTTCAAGAAGCTGCAAAAGCATTTAAGGGAAAGATCCTTTTTGTGCATGTTGATTCTGACAATGCTGATGTTGGGAAACCAATTATGGAATACTTTGGCTTAAGTGGAGATGAACCAAAGGTAATTGCATGTGTTTTATCTGGAGAGCCCATCAAATATCTGTTTGAAGCTGAAATAAATGCGGATAACATCAAGGCTTTTGGAGAGGACTTCCTTGCGGACAAACTCAAGCCTTTCTTCAAGTCCGACCCTGTGCCGGAAAAGAATGATGGAGATGTAAAAATTGTTGTGGGAAAGAATTTTGATGAGATTGTACTGGATGAGTCCAAGGATGTCCTTCTCGAGATATATGCACCCTGGTGTGGGCATTGTCAAGCATTAGAACCTATATATAATAAACTTGCAAAGCAGCTTCGTGGGGTTGACTCCCTTGTCTTAGCTAAGATGGATGGTACAACTAACGAGCATGCTCGGGCCAAGTCTGATGGGTATCCCACAATTTTATTCTATCCAGCAGGAAACAAGAGTTTTGATCCTATTACTTTTGATGGCGATCGCACTGTTAAAGAAATATACAAATTCCTAAAGGCAAATGCAGCAATCCCATTCAAGTTGCCCAAGAAGAGCAAGACCGAAAGTGTAGAGGCTACTCCAGTTACCCAAGATACCAGTGCTGCTGACCAACCTAAAGATGAACTATGATGCTGAGTATTGATATTTATGTATTTGGAAGGAAATTTTCCTGAGTTTTCCGAAATTTTATCTTTACAAGAGCAATGTGCCAGTAATAAAGTTTTATAATTTATGAAAAGTTGAAAAACCCTTCAAGAGCAAACAAATACAGAATTACATACCAGATTCAGCTGTAGCTTGATGTATGGCAAGATAAATTTTATTTCTTCGAATCGCGTTTGACTACTAATCGCGTTTTCATACCAGATCTTGAAATTAATGACCCGGGTTCTATTAATAAACCATTAAACACCTTCATCACTGAGGTGAGATGCCAGTTATTTGAAGGGTTGTAGTTATCCTCAAATTTGATCTTTGACAGATGGGTATGGATGGGTATTCACATATATATATCCATTGTCATATTCTTCATCTTTTGAAAGATTTTTCATTTCCAGTATTTAGTCTTATCCAGGGATATTTGCATCTTAACTT

Ace file of the UniGene uagpf_v2_unigene16447

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22594	173/184

Source	Descriptions	Term	Type	Identity
AutoFact	Protein disulfide isomerase L-2 n=1 Tax=Glycine max RepID=B1Q2X5_SOYBN	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein disulfide isomerase l-2	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	79%
Blast2go	catalytic activity	GO:0003824	Molecular Function	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Disulphide isomerase	IPR005788	-	-
Sma3	Protein disulphide isomerase	IPR005792	-	-
Sma3		IPR017936	-	-
Sma3		IPR006662	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK0

Fln msg:

Fln protein: MATAKLMIFVFMTLVLSVNFQRLQAVENDTELDEIEELELLEDEAEEKTTGAFTAGEEIEPEEDFDEGSYDLEGEDADSGAPAVDEKDVLVLKESNFSDVVSKNRYVLVEFYAPWCGHCQHLAPEYAAAATELKGEVILAKVDATEENDLAQKFEVQGFPTIFFFIDGVHKQYTGQRTKEGIVSWIKRKTGPAVSVLITTEDAETLLDSGTTAAVGLFDSLEGTENKEFEAASRQEDDVLFYQTTSERVAAVLGINTKAKRPALVLLKKEPEKISHFDGKFEKAAVTEFVFANKLPLVTTFTRESANMIFDSSIKKQILLFVTAKDYEKVIPSFQEAAKAFKGKILFVHVDSDNADVGKPIMEYFGLSGDEPKVIACVLSGEPIKYLFEAEINADNIKAFGEDFLADKLKPFFKSDPVPEKNDGDVKIVVGKNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKQLRGVDSLVLAKMDGTTNEHARAKSDGYPTILFYPAGNKSFDPITFDGDRTVKEIYKFLKANAAIPFKLPKKSKTESVEATPVTQDTSAADQPKDEL*

Protein Length: 568

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATCGTCGTGACCTTGGCTGTCACTCAGTGATTTCTCTGCTACATTCAGTGTAGCATACAGGCCCTCTAGATTTCCTGCAGCC_-_ATGGCGACCGCGAAGCTTATGATCTTCGTTTTCATGACTCTTGTGCTCTCTGTAAATTTCCAGCGTCTCCAGGCCGTTGAAAATGACACCGAACTCGACGAGATCGAGGAACTGGAGCTCCTGGAAGACGAGGCTGAAGAAAAGACAACGGGTGCTTTCACGGCTGGAGAGGAAATAGAACCAGAAGAGGACTTCGATGAAGGATCGTACGACCTGGAAGGTGAAGATGCGGATTCCGGTGCGCCGGCTGTCGACGAGAAAGACGTCTTGGTTTTGAAGGAGAGCAACTTCAGCGATGTCGTGAGCAAAAACCGTTATGTTCTGGTCGAGTTTTATGCGCCGTGGTGCGGGCATTGCCAGCACTTGGCTCCAGAGTATGCTGCTGCTGCGACTGAGTTGAAGGGGGAAGTCATTCTGGCTAAAGTGGACGCCACGGAAGAAAATGATCTGGCGCAAAAATTCGAAGTGCAGGGGTTTCCGACCATCTTCTTCTTCATCGATGGAGTTCACAAGCAGTATACAGGCCAAAGAACAAAAGAAGGAATTGTTAGTTGGATCAAGCGAAAAACTGGACCTGCGGTATCTGTTCTCATCACAACAGAGGATGCAGAAACTCTATTGGACTCGGGAACCACAGCTGCTGTTGGTTTGTTTGACTCATTAGAGGGCACTGAAAATAAGGAGTTTGAAGCAGCGTCCAGGCAAGAAGATGACGTGCTCTTTTATCAAACAACTAGTGAACGCGTAGCCGCTGTTCTTGGCATTAACACAAAGGCAAAGCGGCCAGCATTGGTACTTTTGAAGAAGGAGCCTGAAAAAATATCCCATTTTGATGGAAAATTTGAGAAAGCTGCCGTAACTGAGTTCGTCTTTGCAAACAAGCTCCCATTAGTTACGACTTTCACCAGGGAAAGTGCTAATATGATATTTGACAGTTCTATAAAGAAACAAATCCTGCTCTTCGTAACTGCCAAGGATTATGAAAAGGTCATTCCATCATTTCAAGAAGCTGCAAAAGCATTTAAGGGAAAGATCCTTTTTGTGCATGTTGATTCTGACAATGCTGATGTTGGGAAACCAATTATGGAATACTTTGGCTTAAGTGGAGATGAACCAAAGGTAATTGCATGTGTTTTATCTGGAGAGCCCATCAAATATCTGTTTGAAGCTGAAATAAATGCGGATAACATCAAGGCTTTTGGAGAGGACTTCCTTGCGGACAAACTCAAGCCTTTCTTCAAGTCCGACCCTGTGCCGGAAAAGAATGATGGAGATGTAAAAATTGTTGTGGGAAAGAATTTTGATGAGATTGTACTGGATGAGTCCAAGGATGTCCTTCTCGAGATATATGCACCCTGGTGTGGGCATTGTCAAGCATTAGAACCTATATATAATAAACTTGCAAAGCAGCTTCGTGGGGTTGACTCCCTTGTCTTAGCTAAGATGGATGGTACAACTAACGAGCATGCTCGGGCCAAGTCTGATGGGTATCCCACAATTTTATTCTATCCAGCAGGAAACAAGAGTTTTGATCCTATTACTTTTGATGGCGATCGCACTGTTAAAGAAATATACAAATTCCTAAAGGCAAATGCAGCAATCCCATTCAAGTTGCCCAAGAAGAGCAAGACCGAAAGTGTAGAGGCTACTCCAGTTACCCAAGATACCAGTGCTGCTGACCAACCTAAAGATGAACTATGA___TGCTGAGTATTGATATTTATGTATTTGGAAGGAAATTTTCCTGAGTTTTCCGAAATTTTATCTTTACAAGAGCAATGTGCCAGTAATAAAGTTTTATAATTTATGAAAAGTTGAAAAACCCTTCAAGAGCAAACAAATACAGAATTACATACCAGATTCAGCTGTAGCTTGATGTATGGCAAGATAAATTTTATTTCTTCGAATCGCGTTTGACTACTAATCGCGTTTTCATACCAGATCTTGAAATTAATGACCCGGGTTCTATTAATAAACCATTAAACACCTTCATCACTGAGGTGAGATGCCAGTTATTTGAAGGGTTGTAGTTATCCTCAAATTTGATCTTTGACAGATGGGTATGGATGGGTATTCACATATATATATCCATTGTCATATTCTTCATCTTTTGAAAGATTTTTCATTTCCAGTATTTAGTCTTATCCAGGGATATTTGCATCTTAACTT

Fln Alignment:

Contig16447___MATAKLMIFVFMTLVLSVNFQRLQAVXXXXXXXXXXXXXXXXXXXXXKTTGAFTAGXXXXXXXXXXXGSYDLEGEDADSGAPAVDEKDVLVLKESNFSDVVSKNRYVLVEFYAPWCGHCQHLAPEYAAAATELKGEVILAKVDATEENDLAQKFEVQGFPTIFFFIDGVHKQYTGQRTKEGIVSWIKRKTGPAVSVLITTEDAETLLDSGTTAAVGLFDSLEGTENKEFEAASRQEDDVLFYQTTSERVAAVLGINTKAKRPALVLLKKEPEKISHFDGKFEKAAVTEFVFANKLPLVTTFTRESANMIFDSSIKKQILLFVTAKDYEKVIPSFQEAAKAFKGKILFVHVDSDNADVGKPIMEYFGLSGDEPKVIACVLSGEPIKYLFEAEINADNIKAFGEDFLADKLKPFFKSDPVPEKNDGDVKIVVGKNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKQLRGVDSLVLAKMDGTTNEHARAKSDGYPTILFYPAGNKSFDPITFDGDRTVKEIYKFLKANAAIPFKLPKKSKTESVEATPVTQDTSAADQPKDEL
A9NWK0________________MAAAKLLIFALVTLLLFVSFQRLQAVENDTEIDEIEELELLEDEGEEKATEAFTAGDEIEPEEDFEEGPYDLEDEDAGSDAPAVDEKDVAVLKESNFSDIVSKNRYVLVEFYAPWCGHCQRLVPEYAAAATELKGEVVLAKVDATEENDLAQKFEVQGFPTILFFIDGVHKQYTGQRTKEGIVSWIKRKTGPAVSNLTTTEDAETLLDSGSTAAVGLFDSLEGTENEEFEAASRQEDDVLFYQTTSDSVAAVLGINTKAKRPALVLLKKEPEKISHFDGKFEKAPISEFIFANKLPLVTTFTRESANMIFDSSIKKQILLFTSAKDYEKVIPSFQEAAKLFKGKILFVYVESDNADVGKPIMEYFGLSGEEPKVIGCMLSEEPIKYLFEAEIIADNIKVFGEDFLADKLKPFFKSDPLPEKNDGDVKIVVGKNFDEIVLDESKDVLLELYAPWCGHCQALEPVYNKLAKQLRGVDSLVLAKMDGTSNEHARAKSDGFPTILFYPAGNKSFDPITFDDDRTVKGFYKFLKTNAAIPFKLPKKSKPESVEATPVTQDSSAAEQPKDEL

SNPs (tot: 134)

Position	A %	C %	G %	T %	Probability
112	84		16		1.0
114		16	84		1.0
116		84		16	1.0
121			84	16	1.0
122		84		16	1.0
130	84		16		1.0
132		16	84		1.0
139	8		88		0.999262
482		90	9		0.999842
483	90			9	0.999842
486		9	90		0.999842
488	90			9	0.999842
489			9	90	0.999842
494		90		9	0.999842
495		9		90	0.999842
496	9		90		0.999842
499			86	4	0.999642
502	86			9	0.999642
509		10	90		0.999898
513	83	16			0.999991
514	83			16	0.999991
517		16	83		0.999991
518	16		83		0.999991
519		16	83		0.999991
520			83	16	0.999991
521	83	16			0.999991
564		12	87		0.999964
570	89		10		0.999919
578	89	10			0.999919
750	88		11		0.999952
757		12	87		0.999964
861	75	16		8	0.99999
863		83		16	0.999991
869	18			81	0.999994
870		18		81	0.999994
880	81		18		0.999994
881	81			18	0.999994
885	75		8	16	0.99999
886	75	16		8	0.99999
963	87	12			0.992554
970			87	12	0.992554
972	87		12		0.992554
973	87		12		0.992554
977	87	12			0.992554
978	12		87		0.992554
979		12		87	0.992554
982	12		87		0.992554
1065	87	12			0.992554
1066	87		12		0.992554
1069		87	12		0.992554
1072	12	87			0.992554
1073		12		87	0.992554
1077		87	12		0.992554
1081	87		12		0.992554
1082	87			12	0.992554
1084	12			87	0.992554
1085		12	87		0.992554
1086		87		12	0.992554
1132	87	12			0.992554
1135	87		12		0.992554
1137			12	87	0.992554
1138	12			87	0.992554
1139	87	12			0.992554
1140	87	12			0.992554
1141			87	12	0.992554
1142			87	12	0.992554
1144	83		16		0.994512
1145	83	16			0.994512
1146	83			16	0.994512
1154	16			83	0.994512
1221		25	75		1.0
1223	75			25	1.0
1224		25	75		1.0
1225	75		25		1.0
1232	75			12	0.975346
1233	75			25	1.0
1234	75		12	12	0.975346
1237		12		87	0.992554
1238	75	12		12	0.975346
1239	87		12		0.992554
1240		12		87	0.992554
1241		12		87	0.992554
1242	12		75		0.975346
1246		12	87		0.992554
1247	12			87	0.992554
1248			75	12	0.975346
1298	42		57		1.0
1335			85	14	0.993533
1336	85	14			0.993533
1337		85	14		0.993533
1338	85			14	0.993533
1339	85		14		0.993533
1344	85			14	0.993533
1345	85			14	0.993533
1347		85	14		0.993533
1350			14	85	0.993533
1354		14		85	0.993533
1358	90	10			0.90298
1362		90		10	0.90298
1367		90		10	0.90298
1373		90		10	0.90298
1375			90	10	0.90298
1376	90	10			0.90298
1378	90	10			0.90298
1379	90			10	0.90298
1380		10	90		0.90298
1389	83	16			0.999991
1391	83			16	0.999991
1392		16		83	0.999991
1396	83		16		0.999991
1398	83	16			0.999991
1399	83	16			0.999991
1404			16	83	0.999991
1405		16	83		0.999991
1408			83	16	0.999991
1409		16	83		0.999991
1411	83	16			0.999991
1412	83			16	0.999991
1413		16	83		0.999991
1540		16	83		0.999991
1572	85		14		0.999981
1573	85			14	0.999981
1576	85		14		0.999981
1579			85	14	0.999981
1580	85		14		0.999981
1583	85		14		0.999981
1585	14		85		0.999981
1589	14		85		0.999981
1621			7	76	0.999983
1636	90	10			0.90298
1640	90	10			0.90298
1641	10		90		0.90298
1831	69		30		1.0
1859		35		64	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
488	499	TGC TGC TGC TGC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain