SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16408

Length: 892 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene16408 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24213	38/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1421 multi-domain protein	-	-	9.0e-18	23%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	74%
Blast2go	zinc finger protein	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	84%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3		IPR002917	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein Era	IPR005662	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
210		66		33	0.997452
573		10		90	0.90298
813	12			87	0.992554
814	12		87		0.992554
815	87			12	0.992554
823	12	87			0.992554
824		87		12	0.992554
825	87		12		0.992554
826	87		12		0.992554
829			12	87	0.992554
831	87			12	0.992554
832		87	12		0.992554
834	87		12		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain