SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16388

Length: 612 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16388

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11120	26/28

Source	Descriptions	Term	Type	Identity
AutoFact	WS0383.C21_J13 SS-B-23 Picea sitchensis cDNA clone WS0383_J13 3', mRNA sequence.	-	-	86%
FL-Next	sp=Nuclear cap-binding protein subunit 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	nuclear cap-binding protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	74%
Blast2go	primary miRNA processing	GO:0031053	Biological Process	74%
Blast2go	organ morphogenesis	GO:0009887	Biological Process	74%
Blast2go	long-day photoperiodism, flowering	GO:0048574	Biological Process	74%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	74%
Blast2go	RNA splicing, via endonucleolytic cleavage and ligation	GO:0000394	Biological Process	74%
Blast2go	RNA cap binding	GO:0000339	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	MIF4G-like, type 1	IPR015172	-	-
Sma3	MIF4G-like, type 2	IPR015174	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
189	66	33			0.997452
192			33	66	0.997452
193	33			66	0.997452
194		33	66		0.997452
195	66	33			0.997452
197			66	33	0.997452
199	66		33		0.997452
200	66	33			0.997452
201	66			33	0.997452
202	66		33		0.997452
203	66			33	0.997452
204		33	66		0.997452
205	33			66	0.997452
206		33		66	0.997452
208	66	33			0.997452
212		66		33	0.997452
223	75	25			0.996473
225		75		25	0.996473
229		20	80		0.995493
230	60		20		0.99255
231	80			20	0.995493
232		20	80		0.995493
234	80			20	0.995493
235	60	20		20	0.99255
236	60	20	20		0.99255
237			20	80	0.995493
238	58	33			1.0
239			25	75	1.0
240			16	83	0.999991
241		25	8	66	1.0
242		16	25	58	1.0
245	25			75	1.0
247	8			50	1.0
248	8	25	66		1.0
252	75		25		1.0
253	75	25			1.0
255		75	25		1.0
257		25	75		1.0
259		16		83	0.999991
261	8	16		75	0.99999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain