SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16373

Length: 1437 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16373

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5990	59/64
SustainPine v2.0	sp_v2.0_unigene21513	3/64

Source	Descriptions	Term	Type	Identity
AutoFact	clathrin interactor EPSIN 1 [Arabidopsis thaliana] sp\|Q8VY07.1\|EPN1_ARATH RecName: Full=Clathrin interactor EPSIN 1; AltName: Full=EPSIN-related 1 gb\|AAL67001.1\| putative clathrin binding protein [Arabidopsis thaliana] gb\|AAM20255.1\| putative clathrin bin	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	76%
Blast2go	protease binding	GO:0002020	Molecular Function	76%
Blast2go	phospholipid binding	GO:0005543	Molecular Function	76%
Blast2go	clathrin binding	GO:0030276	Molecular Function	76%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	76%
Blast2go	actin filament	GO:0005884	Cellular Component	76%
Blast2go	thylakoid	GO:0009579	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Epsin domain, N-terminal	IPR001026	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
424		16	83		0.994512
426		16		83	0.994512
489		80		20	0.995493
490	80			20	0.995493
492			20	80	0.995493
493		25		75	0.996473
495		75	25		0.996473
500			25	75	0.996473
503		25	75		0.996473
506			25	75	0.996473
507	66	33			0.997452
508		33		66	0.997452
509	33			66	0.997452
510		33		66	0.997452
511			66	33	0.997452
513	33			66	0.997452
515	16		83		0.994512
519	66			33	1.0
523	66	33			1.0
525		66	33		1.0
526	66			33	1.0
527		33	66		1.0
531			66	33	1.0
532		33		66	1.0
535	33			66	1.0
537			33	66	1.0
541			33	66	1.0
717	76			23	1.0
718	76	23			1.0
719	76		23		1.0
721	75		25		1.0
722	25			75	1.0
723		25		75	1.0
724		25	75		1.0
726			75	25	1.0
865		11	88		0.923564
867		11	88		0.923564
1230		88	11		0.923564
1233			11	88	0.923564
1236			11	88	0.923564
1239	88	11			0.923564
1241		88		11	0.923564
1242	88		11		0.923564
1248		11		88	0.923564
1249			88	11	0.923564
1251	11			88	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain