SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16360

Length: 1715 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16360

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11685	84/88

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	uncharacterized protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	70%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiolase	IPR002155	-	0.0	-
Sma3	Translation initiation factor 3 complex, subunit L	IPR019382	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A832

Fln msg: Separated hits, possible frame ERROR between 794 and 796,

Fln protein: MNLNRTGVIVGDALRQAFMPKDEYDSLREEEKVWGRVQRPLVMMFVMVIWVGLVVSAVLALVVVFPGKGERPFCQKRRIQALPSAAYLLTEEEAVRYFWFGLFLPTNILFGVSIIYLLAGIAVAYSAPQRHGCLKIVENNYCTSKRGGVRCLAILNVVFAVIFxxFCALLLGPTILTQESDCSSILFWCYEVMCWGLVILFGGAAFFLRRKAAVILDEGEHYGSLTVGLEMLEAPPQLSQAELERRINAGFSSWMGSSLLSSDEEDGLRTTGLDDVWEDDDVYSIPTVINATRS*

Protein Length: 296

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTATAACAGGTGTGACCTTGGCTGTCGCTTCAGTGAAGCTTCCTGTGTTGTGTTCTCTTTCTTTGGCACGTGCACAAGGTTCATCAGTCAGAGGAGAAAGTGATAAAATTGATATTTTGTAAAAGATTTATGAACTCCCCTCTGAAATTTTGGTGCGAACGGTAGCTTTGGGATTTAGACGCCCACAAGACATGGTCATAAAATCTACTAAATCTGAAACACGCAGGGAGGCGTGAATTGATTAATTGATCGATCGATCGAGTGGAAGGGACAA_-_ATGAATCTGAATCGGACTGGGGTTATTGTGGGGGATGCGCTCCGTCAGGCATTTATGCCCAAGGACGAATACGATAGCCTCAGAGAAGAAGAGAAGGTATGGGGTCGTGTCCAGAGACCGCTCGTCATGATGTTCGTCATGGTAATATGGGTGGGGTTAGTTGTTTCAGCAGTGCTCGCGCTGGTGGTTGTTTTTCCGGGAAAAGGAGAGCGCCCCTTCTGTCAAAAGCGCCGGATTCAGGCACTGCCCTCGGCTGCATATCTTTTGACCGAGGAAGAGGCAGTCCGGTACTTTTGGTTTGGTCTGTTCTTGCCGACCAACATATTATTTGGGGTTTCTATAATTTATCTATTAGCAGGGATTGCTGTTGCATATTCTGCTCCGCAAAGACATGGATGCTTGAAGATTGTGGAGAATAATTACTGCACATCTAAGCGGGGTGGTGTCCGTTGTCTTGCAATACTCAATGTTGTTTTTGCGGTGATTTTTGCxxxATTTTGTGCACTGCTTCTTGGGCCAACTATTCTCACTCAAGAAAGTGATTGCTCTAGTATCTTATTCTGGTGCTATGAAGTTATGTGTTGGGGCCTTGTCATCTTATTTGGAGGTGCTGCATTTTTCTTAAGGCGCAAGGCAGCTGTCATTCTTGATGAAGGTGAACATTATGGTAGTCTCACAGTAGGTCTTGAGATGCTTGAGGCTCCACCACAATTATCACAAGCTGAGTTGGAGAGGCGCATTAATGCAGGATTTAGCTCCTGGATGGGATCCTCACTTCTGTCATCAGATGAAGAGGATGGGCTCCGCACAACTGGCCTAGATGATGTGTGGGAAGATGATGATGTTTATAGCATACCGACAGTCATAAATGCTACAAGATCCTGA___AGTCTTAGGAATGCACAAGCTTTTTGTGGTAACACAATTTGGTTGTTATTATCAACCCCGCCCATCAGAGATTCTATTTGACATCAATTTGAATGTTGGTACTAAAACCAGGTGGCAATTGCACTGGAACCATTGTAAATGTATATTTCTTTATATTGTTTTTACTGAAAAGGCTTCATGACATGGATCATCTTAGTATATGAACATTATCTATCCTGGCATGGTTTTCTGTTTAGAAAGGCATGTAGCTCATATCTCGACAATTCCAGTCCTCCCTTCGAATCTTATATACTTGGGTGGTAGGCAAAGGAAAGTAGGACTGTGGGAAGAAATGAAGAAATTATATCTACCAAATATGACCACATATTAACCAGAAGTGTACAGAAGCAACCAGTGGGACTGGTGTAGACATGCCATACTTTGATCAATAGCACAGAGGAAACGGTCAATCCCATGGACTGGTATGTATGAAGATGCATATTTGAACAATCCAATGGGACCATATTTTGAATAAAGGTGACTTCAAGGAC

Fln Alignment:

Contig16360___LNRTGVIVGDALRQAFMPKDEYDSLREEEKVWGRVQRPLVMMFVMVIWXXXXXXXXXXXXXXFPGKGERPFCQKRRIQALPSAAYLLTEEEAVRYFWFGLFLPTNILFGVSIIYLLAGIAVAYSAPQRHGCLKIVENNYCTSKRGGVRCLAILNVVFAVIFAxFCALLLGPTILTQESDCSSILFWCYEVMCWGLVILFGGAAFFLRRKAAVILDEGEHYGSLTVGLEMLEAPPQLSQAELERRINAGFXXXXXXXXXXXXXXXXXRTTGLDDVWEDDDVYSIPTVINATRS*SLRNA
D5A832________________MNLRGAIVGDALRQAFMPKDEYESLREEEKVWGRLQRPLVMMFVTVIWLGIVVSALLALIVVFPGKGERPFCQKRRIQALPTSAYLLTEEEAVQYFWFGLFLPTAILIGISIFYLLAGIAVAYSAPQRHGCLKIVENNYCTSKRGGVRCLAILNIAFAISFAxFCALLLGPTILTLESDCSTILFWCYEVLCWGLVVLFGGTAFFLRRKAAVILDEGEHYGSFSVGLEMLEAPPQLPQAELERRINAGFNSWMGSSLLSSDEEDGPRTTGLDDVWEDDDVYSMPTVINATSSSNLRNA

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
145		18		81	1.0
146		6	12	81	0.999943
148		12		87	0.999964
151	81	6			0.999943
152	81		12	6	0.999943
154	81	12		6	0.999943
155		18	81		1.0
156	87			12	0.999964
158			12	87	0.999964
159		6	12	81	0.999943
160	87	12			0.999964
163	87	12			0.999964
456		14		85	0.993533
460			85	14	0.993533
463	85	14			0.993533
465		14		85	0.993533
746		11	88		0.923564
747			77	22	0.999999
749		22	77		0.999999
750			22	77	0.999999
813			16	83	0.999991
816			16	83	0.999991
820	16		83		0.999991
824	83			16	0.999991
825		83		16	0.999991
826			16	83	0.999991
827	83		16		0.999991
828		18		81	0.999994
830		81	18		0.999994
929	79	16	4		1.0
931			83	16	1.0
934		83	16		1.0
936	79	16		4	1.0
937		16	83		1.0
938			83	16	1.0
939		83		16	1.0
940	79		16	4	1.0
948		8		92	0.999718
1207	88		11		0.923564
1208			87	12	0.992554
1238	66	33			0.997452
1239			33	66	0.997452
1241	66	33			0.997452
1242			33	66	0.997452
1243		66		33	0.997452
1244	66		33		0.997452
1248		66		33	0.997452
1249		66		33	0.997452
1251		66	33		0.997452
1253		66		33	0.997452
1254	66		33		0.997452
1258		33	66		0.997452
1259	66			33	0.997452
1260		33	66		0.997452
1263		33		66	0.997452
1368			12	87	0.992554
1371	87		12		0.992554
1373		10	90		0.90298
1374	90			10	0.90298
1380	90		10		0.90298
1387	10			90	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
276	289	GATC GATC GATC GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain