SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16345

Length: 458 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16345

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17020	24/28
SustainPine v2.0	sp_v2.0_unigene78916	3/28

Source	Descriptions	Term	Type	Identity
AutoFact	Secretory carrier membrane protein n=1 Tax=Elaeis guineensis RepID=B3TLU6_ELAGV	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	sc3 protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	early endosome	GO:0005769	Cellular Component	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	SCAMP	IPR007273	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
56		16		83	0.994512
59		16		83	0.994512
60			16	83	0.994512
64		16		83	0.994512
65		16		83	0.994512
67	83			16	0.994512
71	83	16			0.994512
72		83		16	0.994512
74		83		16	0.994512
75		16		83	0.994512
77		28		71	1.0
78			14	85	0.993533
79	71	14		14	0.984337
80	85	14			0.993533
83	90	10			0.90298
85		10		90	0.90298
86		10		90	0.90298
87			90	10	0.90298
88			90	10	0.90298
91		10		90	0.90298
93			10	90	0.90298
96	90		10		0.90298
97		10	90		0.90298
98		90		10	0.90298
100	90			10	0.90298
104		10		90	0.90298
106		10		90	0.90298
151			13	86	0.999973
152			86	13	0.999973
154	86		13		0.999973
155		86		13	0.999973
158		13	86		0.999973
169		13	86		0.999973
191	85		14		0.999981
192	85			14	0.999981
193		85	14		0.999981
195		14		85	0.999981
196		14	85		0.999981
197	85			14	0.999981
198	85			14	0.999981
199	85		14		0.999981
203	85		14		0.999981
205		14	85		0.999981
206	13	86			0.999973
209	13		86		0.999973
442		33		66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain