SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16322

Length: 802 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene16322 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29284	6/9
SustainPine v2.0	sp_v2.0_unigene77680	2/9
SustainPine v2.0	sp_v2.0_unigene78324	1/9

Source	Descriptions	Term	Type	Identity
AutoFact	OSJNBa0024J22.19 protein n=2 Tax=Oryza sativa RepID=Q7XRN3_ORYSJ	-	-	46%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	34%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
172	33		66		1.0
184			66	33	1.0
193	16	83			0.994512
195	16		83		0.994512
199	33		33	33	1.0
203	33	33		33	1.0
207	16		83		0.994512
215			85	14	0.993533
216		85		14	0.993533
224	28		71		1.0
248		75		25	1.0
251	50			50	1.0
274	12	87			0.992554
276		12		87	0.992554
280		25		75	1.0
281	75		25		1.0
285	12			87	0.992554
286	87			12	0.992554
287	25		75		1.0
298		42		57	1.0
300	14		71	14	0.984337
301	28		71		1.0
308	71			28	1.0
311		85		14	0.993533
312	14			85	0.993533
313		85		14	0.993533
315	14		85		0.993533
323	85		14		0.993533
325	85		14		0.993533
327	85		14		0.993533
331	14		85		0.993533
336		71		28	1.0
337		85		14	0.993533
338	14		71	14	0.984337
339		14		85	0.993533
341		57		42	1.0
345	14		71	14	0.984337
352		85		14	0.993533
374	16		83		0.994512
380	16	16		66	0.988813
381	16		83		0.994512
389	16	83			0.994512
395	16		16	66	0.988813
397			83	16	0.994512
404	16	50		33	1.0
406	16		83		0.994512
409		83		16	0.994512
411	33		33	33	1.0
413		83		16	0.994512
418		83		16	0.994512
419	16			83	0.994512
424		83		16	0.994512
425	83			16	0.994512
430	16	83			0.994512
432		16	83		0.994512
489	66			33	0.997452
490	66	33			0.997452
491	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain