SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16309

Length: 403 nt

UniGene Fasta

>uagpf_v2_unigene16309
CGTCGTGACCTTGGCTGTCACTCAATCGTTATGAGCCCGATAGGGCACCAGCATGGGCAAGGAAACCTGAAGGTTTGAATCCAAAGAGGGATGAAATATCAACGTCTCATCGCCGGGCTCAGAAAGTTGCTTGATAATTCTTTCCAATGATAAGAATCATTGGACCTTATTGTAGAAGAGCATATAAAAATGCCTCGCATTCTTTTCACGAAGGTTATATACCTTTTCTAATTGTAACATTCCCCTCCGTGGGTTCATCATTTGAATTTTGTAACTGAATTTTGTAATCTTTTCACCCCTGAATATGGGGATGATTGAATGATATCCTCCATAGCACAAGGCACAGAAGAAGTGTTTTGTGTTGGGTTATCTTGGATGTCACACAGGTTCAGATATACAAATT

Ace file of the UniGene uagpf_v2_unigene16309

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3877	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] sp\|P93831.2\|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN	-	-	64%
FL-Next	sp=Histone-lysine N-methyltransferase EZ2; Zea mays (Maize).	-	-	71%
Blast2go	polycomb protein ez1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	histone lysine methylation	GO:0034968	Biological Process	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8S4P5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 44 - 894

Fln protein: S*PWLSLNRYEPDRAPAWARKPEGLNPKRDEISTSHRRAQKVA*

Protein Length: 45

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTTATGAGCCCGATAGGGCACCAGCATGGGCAAGGAAACCTGAAGGTTTGAATCCAAAGAGGGATGAAATATCAACGTCTCATCGCCGGGCTCAGAAAGTTGCTTGA___TAATTCTTTCCAATGATAAGAATCATTGGACCTTATTGTAGAAGAGCATATAAAAATGCCTCGCATTCTTTTCACGAAGGTTATATACCTTTTCTAATTGTAACATTCCCCTCCGTGGGTTCATCATTTGAATTTTGTAACTGAATTTTGTAATCTTTTCACCCCTGAATATGGGGATGATTGAATGATATCCTCCATAGCACAAGGCACAGAAGAAGTGTTTTGTGTTGGGTTATCTTGGATGTCACACAGGTTCAGATATACAAATT

Fln Alignment:

Contig16309___RYEPDRAPAWARKPEGLNPKRDEISTSHRRAQKVA
Q8S4P5________________RYGPDQAPAWARRPEG--SKKDEASVSHRRAHKVA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
205		28		71	1.0
206			28	71	1.0
208		71	28		1.0
211		28	71		1.0
212	71			28	1.0
213	71			28	1.0
216		28		71	1.0
218	71		28		1.0
221		28		71	1.0
226	14			85	0.993533
312			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain