SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16268

Length: 2084 nt

UniGene Fasta

>uagpf_v2_unigene16268
AAATGAAATCATCGCCCCTTAAACCAGTCCTTTCTAATTTACGTTTACGTCGCTTTTCACGTAACCAATATCATACGCCAGCCATATTCTTCTTATTCTCTGTAGTGCTCTCTGCCTACGTGATGCATGAAAACATTTATTGTCATTGTTAGCAGCTGGGCACATATTGTTATCATTTTCTGTTAATGCCCTCTGCCATCCCTGACTCAAAAAAGTGGTATATTGCCATAGTTGGGCACCCGGGCACGACTTCCCGGCATTGTTTGTGACATTCGGTTTCTCCGCCCGAGGGAGAATTCACAATCCGAGCTGCGAAGATGGGATGGTTACGCCTATTGTTCTTGTGGATTGGGTGCCTTCACTGCATCTCTCAGAAGGTTTGCTCCGCCCCCATTCCTAGCACATTAGACGGGCCATTCACTCCCGTCACGGTGTCGCTCGACCCGAATCTTCGTCTGGGAAGCGATGATCTCCCCCCTTATCATCCTCGTCTCGTCAAACGAGTCCCCTCTGTTTTCCCAGAGCAGATCAAGCTCGCACTCTCCACGCACGATGCCATGTGGGTTTCCTGGATAACAGGGGACGCTCAAATTGGACCCAAAGTGGTTCCGCTGGATCCTTCGTCTGTGGGGTCCGAGGTTTTTTATGGCACCCAGACTGGTAATTATACCTTCACTTCCAAAGGGAAGTCCCTAGTCTACAGCCAGATATATCCATACGCAGGCCTTCTCAACTACACCTCTGGAATTATTCATCGGGTGCGTCTTACTGGGCTTCTTCCTAACACAAAATACTACTACAGATGTGGAGACCAAACCTTATCTTCCATAAGTGAAGAGCACGAGTTTGTCACACCACCATCTCCAGGCCCAAATAGCTATCTTACTCGAATAGCAGTTATTGGTGATTTGGGCCTCACATACAATTCATCTAGCACATATGATCATCTTGTTGAAAATGATCCCAGCATGATTCTTATGGTTGGAGATCTGGTCTATGCAAACAACTACCGAACCACAGGCGACAAAGGAGTACCATGCTATGAATGTGACTTTCCAGACACTCCTATCAGAGAGACATACCAACCTCGCTGGGATGCATGGGGCAGATTTATGGAGCCATTGTTGTCACGCATACCAATGATGGTTCTAGGAGGAAATCATGATATAGAACCTCAAGTGGGAGACCTCACATTTGCATCATATAGCGCCCGGTTTGCAGTTCCCTCTGAAGAGTCTGGATCCAACAATAGCCTGTATTATTCCTTCAATGTTGGAGGGGTACACTTTCTCATGCTTGCAGCTTATATAGATTTCAATAGATCCAGTGAACAATATGCTTGGCTCAAGCAAGATCTTGAAAATGTAAACCGTGAACTGACTCCTTGGTTGATTGCATCATGGCATCCTCCTTGGTATAATAGTTACACTAACCATTATCAAGAATTTGAGTGTATGAGACAACAAATGGAAGACATCCTATACGAATATGGTGTAGACTTGGTGTTCAATGGCCATGTACATGCATATGAGAGGATGAACAGAGTTTATAACTATGTCCTAAACCCATGTGGTCCAGTGTATATCACAGTGGGAGATGGTGGAAACATTGAGAAACTTGCAACAAGGCATGCAGACGAACCTGGAAATCGTCGTGACCTTGGCTAACCACGACTTTGGAGGGGTTTGCCCTTTTAATTACACCTCTGGTCCAGCAAAGGGGAAGCTTTGCTGGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCTACCTGTGAAAAATAAGGGGAGAAATCTCCTTTGTTGAAAGCAAACGTAAGCAGTGACAAATACTCAGAACACCCTAGTCTCAGCTTTACGGATGAAAAGGATCTATCTCTGAGAACATCTAGCTATCCTTGCCATAAGCAAAATATTTGCGTAAATATTGTTATGTGATTTG

Ace file of the UniGene uagpf_v2_unigene16268

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26465	75/107
SustainPine v2.0	sp_v2.0_unigene33161	11/107
SustainPine v2.0	sp_v2.0_unigene35879	18/107

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallophos multi-domain protein	-	-	4.0e-21	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA01

Fln msg: Separated hits, possible frame ERROR between 1637 and 1735, your sequence is longer than subject: 535 - 423

Fln protein: MGWLRLLFLWIGCLHCISQKVCSAPIPSTLDGPFTPVTVSLDPNLRLGSDDLPPYHPRLVKRVPSVFPEQIKLALSTHDAMWVSWITGDAQIGPKVVPLDPSSVGSEVFYGTQTGNYTFTSKGKSLVYSQIYPYAGLLNYTSGIIHRVRLTGLLPNTKYYYRCGDQTLSSISEEHEFVTPPSPGPNSYLTRIAVIGDLGLTYNSSSTYDHLVENDPSMILMVGDLVYANNYRTTGDKGVPCYECDFPDTPIRETYQPRWDAWGRFMEPLLSRIPMMVLGGNHDIEPQVGDLTFASYSARFAVPSEESGSNNSLYYSFNVGGVHFLMLAAYIDFNRSSEQYAWLKQDLENVNRELTPWLIASWHPPWYNSYTNHYQEFECMRQQMEDILYEYGVDLVFNGHVHAYERMNRVYNYVLNPCGPVYITVGDGGNIEKLATRHAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYIVRQPEICAHMTAYL*

Protein Length: 536

Fln nts: AAATGAAATCATCGCCCCTTAAACCAGTCCTTTCTAATTTACGTTTACGTCGCTTTTCACGTAACCAATATCATACGCCAGCCATATTCTTCTTATTCTCTGTAGTGCTCTCTGCCTACGTGATGCATGAAAACATTTATTGTCATTGTTAGCAGCTGGGCACATATTGTTATCATTTTCTGTTAATGCCCTCTGCCATCCCTGACTCAAAAAAGTGGTATATTGCCATAGTTGGGCACCCGGGCACGACTTCCCGGCATTGTTTGTGACATTCGGTTTCTCCGCCCGAGGGAGAATTCACAATCCGAGCTGCGAAG_-_ATGGGATGGTTACGCCTATTGTTCTTGTGGATTGGGTGCCTTCACTGCATCTCTCAGAAGGTTTGCTCCGCCCCCATTCCTAGCACATTAGACGGGCCATTCACTCCCGTCACGGTGTCGCTCGACCCGAATCTTCGTCTGGGAAGCGATGATCTCCCCCCTTATCATCCTCGTCTCGTCAAACGAGTCCCCTCTGTTTTCCCAGAGCAGATCAAGCTCGCACTCTCCACGCACGATGCCATGTGGGTTTCCTGGATAACAGGGGACGCTCAAATTGGACCCAAAGTGGTTCCGCTGGATCCTTCGTCTGTGGGGTCCGAGGTTTTTTATGGCACCCAGACTGGTAATTATACCTTCACTTCCAAAGGGAAGTCCCTAGTCTACAGCCAGATATATCCATACGCAGGCCTTCTCAACTACACCTCTGGAATTATTCATCGGGTGCGTCTTACTGGGCTTCTTCCTAACACAAAATACTACTACAGATGTGGAGACCAAACCTTATCTTCCATAAGTGAAGAGCACGAGTTTGTCACACCACCATCTCCAGGCCCAAATAGCTATCTTACTCGAATAGCAGTTATTGGTGATTTGGGCCTCACATACAATTCATCTAGCACATATGATCATCTTGTTGAAAATGATCCCAGCATGATTCTTATGGTTGGAGATCTGGTCTATGCAAACAACTACCGAACCACAGGCGACAAAGGAGTACCATGCTATGAATGTGACTTTCCAGACACTCCTATCAGAGAGACATACCAACCTCGCTGGGATGCATGGGGCAGATTTATGGAGCCATTGTTGTCACGCATACCAATGATGGTTCTAGGAGGAAATCATGATATAGAACCTCAAGTGGGAGACCTCACATTTGCATCATATAGCGCCCGGTTTGCAGTTCCCTCTGAAGAGTCTGGATCCAACAATAGCCTGTATTATTCCTTCAATGTTGGAGGGGTACACTTTCTCATGCTTGCAGCTTATATAGATTTCAATAGATCCAGTGAACAATATGCTTGGCTCAAGCAAGATCTTGAAAATGTAAACCGTGAACTGACTCCTTGGTTGATTGCATCATGGCATCCTCCTTGGTATAATAGTTACACTAACCATTATCAAGAATTTGAGTGTATGAGACAACAAATGGAAGACATCCTATACGAATATGGTGTAGACTTGGTGTTCAATGGCCATGTACATGCATATGAGAGGATGAACAGAGTTTATAACTATGTCCTAAACCCATGTGGTCCAGTGTATATCACAGTGGGAGATGGTGGAAACATTGAGAAACTTGCAACAAGGCATGCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCTACCTGTGA___AAAATAAGGGGAGAAATCTCCTTTGTTGAAAGCAAACGTAAGCAGTGACAAATACTCAGAACACCCTAGTCTCAGCTTTACGGATGAAAAGGATCTATCTCTGAGAACATCTAGCTATCCTTGCCATAAGCAAAATATTTGCGTAAATATTGTTATGTGATTTG

Fln Alignment:

Contig16268___PEQIKLALSTHDAMWVSWITGDAQIGPKVVPLDPSSVGSEVFYGTQTGNYTFTSKGKSLVYSQIYPYAGLLNYTSGIIHRVRLTGLLPNTKYYYRCGDQTLSSISEEHEFVTPPSPGPNSYLTRIAVIGDLGLTYNSSSTYDHLVENDPSMILMVGDLVYANNYRTTGDKGVPCYECDFPDTPIRETYQPRWDAWGRFMEPLLSRIPMMVLGGNHDIE--PQVGDLTFASYSARFAVPSEESGSNNSLYYSFNVGGVHFLMLAAYIDFNRSSEQYAWLKQDLENVNRELTPWLIASWHPPWYNSYTNHYQEFECMRQQMEDILYEYGVDLVFNGHVHAYERMNRVYNYVLNPCGPVYITVGDGGNIEKLATRHADxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYI
D5AA01________________PQQVHVSLIGENQMRITWITNDANV-PSVVE-----------YGTSPGVYNFSAKGENTSYTY-------LGYRSGQIHYVTLGPLEANTIYYYRCG-----TYGPEYSVKTPRSEFPITF----AIVGDLGQTGRTNSTLQHIQQANYDVFLLPGDLSYA------------------------DTQQPLWDSFGMLVQPLASTRPWMVTEGDHEIERIPIVITTEFIAYNARWRMPFEESGSSSNLYYSFEVAGVHIVMLGSYAEYKQNSDQYEWLQADLSRVNKTRTPWIIVLFHVPWYNSNAAHQGEGNDMRAAMEPLLYAAKVDIAFAGHVHAYERFSRVYMNTVNPCGAVHITIGDGGNSQGLDSDFLDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSQPQWSLFREASFGHGELTIYNATHAHWSWHRNDDDASTMADENWI

SNPs (tot: 122)

Position	A %	C %	G %	T %	Probability
95	88			11	0.923564
145	88		11		1.0
147		11		88	1.0
150			11	88	1.0
152		11	88		1.0
154	88		11		1.0
160			88	11	1.0
164	83	3		6	0.989159
166	86		6		0.994799
167		13		86	1.0
168	6			93	0.999364
171		6		93	0.999364
259	92			7	0.999664
509	11	88			0.923564
551	72	18			0.999994
554	81			18	0.999994
555		18		81	0.999994
556	18		81		0.999994
570		90	10		0.90298
572		10	90		0.90298
576	90		10		0.90298
579	90	10			0.90298
580			90	10	0.90298
581			90	10	0.90298
621			14	85	0.999981
627		14		85	0.999981
628			85	14	0.999981
632	7		78	14	0.999974
637	27		72		1.0
638	81	18			0.999994
639			81	18	0.999994
640		18	81		0.999994
641	18			81	0.999994
733	90		9		0.999872
734	90			9	0.999872
736			9	90	0.999872
737	90			9	0.999872
738		90	9		0.999872
747	90			9	0.999872
748	90		9		0.999872
750		10		90	0.999898
752		10		90	0.999898
811	47			52	1.0
986	14		85		0.993533
987		14	85		0.993533
988	85			14	0.993533
989		14	85		0.993533
1030	87	12			0.992554
1032			87	12	0.992554
1033	87	12			0.992554
1039	87			12	0.992554
1044	87		12		0.992554
1046		12	87		0.992554
1048	87	12			0.992554
1050	12		87		0.992554
1081	85		14		0.993533
1083	85	14			0.993533
1084		85	14		0.993533
1085		85		14	0.993533
1086	85		14		0.993533
1091		85	14		0.993533
1096			85	14	0.993533
1097		14	85		0.993533
1102	20		80		0.995493
1103		80		20	0.995493
1116		16		83	0.994512
1117	83		16		0.994512
1119		16	66		0.988813
1121	83			16	0.994512
1125	83			16	0.994512
1127		25	12	62	1.0
1129		12		87	0.992554
1130		25		75	1.0
1133		75	25		1.0
1136			62	12	1.0
1138	75			25	1.0
1140	75		25		1.0
1141		75	25		1.0
1143	75			25	1.0
1144	75		25		1.0
1146		25	75		1.0
1150		25	75		1.0
1151	25		75		1.0
1179		80	20		0.999996
1182	80		20		0.999996
1183	80			20	0.999996
1185	20			80	0.999996
1186		20	80		0.999996
1187		20	80		0.999996
1188			80	20	0.999996
1189	80			20	0.999996
1192		80	20		0.999996
1195		80	20		0.999996
1196	80			20	0.999996
1200		20		80	0.999996
1202		20	80		0.999996
1203	20	80			0.999996
1250	90		10		0.90298
1251	90			10	0.90298
1254	90		10		0.90298
1256	90		10		0.90298
1257	10		90		0.90298
1261			90	10	0.90298
1262			10	90	0.90298
1263	90		10		0.90298
1264		10		90	0.90298
1266	90		10		0.90298
1268		10		90	0.90298
1269	10	90			0.90298
1271			16	83	0.999991
1274	81		18		0.999994
1276		18		81	0.999994
1277		18	81		0.999994
1282	81			18	0.999994
1284		22	77		0.999999
1285	22		77		0.999999
1286		22	77		0.999999
1288	77	22			0.999999
1289	22	77			0.999999
1471	46		53		1.0
1549	54		45		1.0
2083	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain