SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16248

Length: 1187 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16248

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3181	27/31
SustainPine v2.0	sp_v2.0_unigene68531	2/31

Source	Descriptions	Term	Type	Identity
AutoFact	carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp\|Q9M2F8.2\|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb\|AEE79801.1\| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	endonuclease exonuclease phosphatase family expressed	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Poly(A)-specific ribonuclease.	EC:3.1.13.4	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	endonuclease activity	GO:0004519	Molecular Function	0.0	84%
Blast2go	poly(A)-specific ribonuclease activity	GO:0004535	Molecular Function	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
70		66	33		0.997452
72		33		66	0.997452
74			66	33	0.997452
76	33	66			0.997452
77		33		66	0.997452
80		66		33	0.997452
81			33	66	0.997452
82		66	33		0.997452
83	66	33			0.997452
86			66	33	0.997452
91		33		66	0.997452
149			33	66	1.0
152	66		33		1.0
153	66			33	1.0
156		33	66		1.0
157		33	66		1.0
160		66	33		1.0
161	66		33		1.0
162		33	66		1.0
163	66			33	1.0
167	33		66		1.0
168	66	33			1.0
219	11		88		0.923564
222		10	90		0.90298
223			10	90	0.90298
225			10	90	0.90298
229	90	10			0.90298
230			90	10	0.90298
231	66			11	0.999999
232	77		11		0.968132
233	88		11		0.923564
234	88	11			0.923564
235	88			11	0.923564
236	66		11		0.999999
237	66			11	0.999999
242	88			11	0.923564
243		11	88		0.923564
245		16	83		0.999991
248			16	83	0.999991
250	83		16		0.999991
251	16			83	0.999991
252	83	16			0.999991
255			83	16	0.999991
258	83		16		0.999991
260	83			16	0.999991
262		83		16	0.999991
266		16		83	0.999991
267			83	16	0.999991
341		54		45	1.0
364	88			11	0.999937
365	88		11		0.999937
869	85	14			0.993533
870			14	71	0.984337
873	85		14		0.993533
874		85		14	0.993533
875		85	14		0.993533
877	85	14			0.993533
882	85		14		0.993533
883		85	14		0.993533
885	85			14	0.993533
887			83	16	0.994512
888		16	83		0.994512
891	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain