SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16218

Length: 742 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16218

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27550	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisomal 2,4-dienoyl-CoA reductase [Arabidopsis thaliana] sp\|Q9LTV6.1\|DECR2_ARATH RecName: Full=Peroxisomal 2,4-dienoyl-CoA reductase dbj\|BAB02424.1\| oxidoreductase, short-chain dehydrogenase/reductase family-like protein [Arabidopsis thaliana] gb\|AAL6	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	peroxisomal -dienoyl- reductase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	83%
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
105	33		66		0.997452
106			33	66	0.997452
110	33		66		0.997452
115			33	66	0.997452
117	33		66		0.997452
121		33	66		0.997452
123	33	66			0.997452
124	66			33	0.997452
127		66		33	0.997452
272	75			25	0.996473
275		25	75		0.996473
277		25	75		0.996473
278			75	25	0.996473
279	75	25			0.996473
280	25		75		0.996473
288	25			75	0.996473
469	60	20		20	0.99255
472	60	40			1.0
473	80		20		0.995493
474	60	20		20	0.99255
475			80	20	0.995493
478		20	60		0.99255
479		20		80	0.995493
484	80	20			0.995493
485	80			20	0.995493
487	80			20	0.995493
490		20		80	0.995493
492		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain