SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16179

Length: 1585 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16179

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4902	13/13

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI	-	-	5.99756e-43	82%
FL-Next	sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Blast2go	dna topoisomerase 1	-	-	1.4013e-45	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase.	EC:5.99.1.2	-	1.4013e-45	89%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	1.4013e-45	89%
Blast2go	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	1.4013e-45	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA unwinding involved in replication	GO:0006268	Biological Process	1.4013e-45	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.4013e-45	89%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	1.4013e-45	89%
Blast2go	meristem structural organization	GO:0009933	Biological Process	1.4013e-45	89%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	1.4013e-45	89%
Blast2go	stem cell maintenance	GO:0019827	Biological Process	1.4013e-45	89%
Blast2go	flower morphogenesis	GO:0048439	Biological Process	1.4013e-45	89%
Blast2go	organ formation	GO:0048645	Biological Process	1.4013e-45	89%
Blast2go	DNA topological change	GO:0006265	Biological Process	1.4013e-45	89%
Blast2go	chromatin remodeling	GO:0006338	Biological Process	1.4013e-45	89%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.4013e-45	89%
Blast2go	DNA topoisomerase type I activity	GO:0003917	Molecular Function	1.4013e-45	89%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	1.4013e-45	89%
Blast2go	protein binding	GO:0005515	Molecular Function	1.4013e-45	89%
Blast2go	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	1.4013e-45	89%
Blast2go	chromosome	GO:0005694	Cellular Component	1.4013e-45	89%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase I, C-terminal	IPR001631	-	-
Sma3	DNA topoisomerase I, DNA binding, eukaryotic-type	IPR008336	-	-
Sma3	DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type	IPR013030	-	-
Sma3	DNA topoisomerase I, C-terminal, eukaryotic-type	IPR013499	-	-
Sma3	DNA topoisomerase I, catalytic core, eukaryotic-type	IPR013500	-	-
Sma3	DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type	IPR014711	-	-
Sma3	DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type	IPR014727	-	-
Sma3	DNA topoisomerase I, active site	IPR018521	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P30181

Fln msg: Separated hits, possible frame ERROR between 1552 and 1555, Distance to subject end: 511 aas, your sequence is shorter than subject: 428 - 916

Fln protein: MSSAPRLPQPKHVSVCVGRAPSSEQRSGKRPPDGDDSRPLKNLLFGVDDGDSDDSEDGKPLSHKVSILPKGATENTFSRDSKKSCNLLPTSKFIQPKVSMQTESAKSENDSDDDVPLRKRFQVKPLTKPPSEGSPMGAVDSEDEKPLALRHTPKSPNERSPMDSDDSEDEKPLSTRHNLKQANKGSFMDSDVNNVALKNKSNGLVKKDINGKTQSVKIEINSKKRPSDQGDNSLSYSITKKAKPSGVSPEPKVKAEPEVKAEADGYSDDEDDIPIAQRMKKAQMAKPSPPLAKLPSSIEKVVKEERKENIKIDPDDDTDDEDDIPIAQRLKKTELPKPSPSIAKPSPSIAKPSPSIAKSKAFKKKVLPVKSITSSAKKLKGGKLPPGSGEGQKWTTLQHSGVIFPPPYKPHGVKLLxxGKPVDLTPEE

Protein Length: 429

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCTTATTTTCAGACGGTCCAATCCAACTATCAAGCCAAAACAATCAAATGCTTACGTCGTGACCTTGTCTGTTACATCTCAAAGGCTTGTCTCAAATACTTCTGCTTCAAGAGATGTAGTGCAGGCAAAGTCCCCACCCATTGTGCAGAGACCTGCCATACAATCTAAGAACACTCCAGTCCCACCCATTGTGCAGAGACCTGCCATACAATCGAAGAACACTCCAGTGGCAAGGCCATCAGCTCCTTATCCTTCAAAATCCAGCTCTGGCAAC_-_ATGAGTTCTGCTCCAAGATTGCCTCAGCCCAAGCACGTTTCTGTTTGTGTGGGTAGAGCTCCCAGTTCGGAGCAGAGATCTGGAAAGAGGCCTCCAGATGGTGATGACTCTAGGCCTCTAAAGAATTTGCTTTTTGGAGTAGATGATGGTGATTCTGATGATTCTGAAGATGGCAAGCCTTTAAGTCATAAGGTGTCTATATTGCCAAAAGGAGCTACAGAAAATACATTCTCCAGAGATTCAAAAAAAAGTTGCAATTTGCTGCCTACTAGCAAATTTATTCAGCCCAAAGTATCTATGCAAACAGAGTCTGCGAAGTCTGAGAATGATTCAGATGATGATGTTCCCTTGCGTAAGAGGTTTCAGGTAAAACCGTTGACAAAACCACCCAGTGAAGGTTCTCCTATGGGTGCTGTTGACTCCGAGGATGAGAAGCCTTTAGCATTAAGACACACACCAAAATCTCCCAATGAAAGATCCCCCATGGATAGTGACGACTCTGAAGATGAGAAACCTTTATCAACAAGACACAATCTAAAACAAGCCAATAAAGGTTCCTTTATGGATAGTGATGTAAATAATGTAGCATTAAAGAACAAATCAAATGGATTGGTTAAGAAAGACATAAATGGAAAAACTCAGTCTGTTAAAATTGAAATTAATTCCAAGAAGAGACCTTCAGATCAGGGGGATAACAGTCTAAGCTATTCAATCACCAAAAAGGCCAAGCCATCAGGTGTATCACCAGAGCCCAAAGTGAAAGCAGAACCAGAGGTTAAGGCAGAGGCTGATGGATACAGTGATGATGAGGATGATATTCCTATTGCTCAGCGCATGAAGAAAGCTCAAATGGCAAAGCCATCACCTCCTTTAGCTAAGCTACCTTCCTCAATCGAAAAGGTTGTCAAGGAAGAGAGGAAGGAGAATATTAAGATAGATCCCGATGATGATACTGACGATGAGGATGATATTCCAATTGCACAGCGCTTGAAGAAAACTGAATTGCCAAAGCCATCGCCTTCTATAGCAAAGCCATCACCTTCTATAGCAAAGCCATCGCCTTCTATAGCAAAGTCAAAGGCTTTCAAGAAGAAGGTGCTGCCAGTTAAGAGCATAACAAGCAGTGCAAAAAAGTTGAAAGGGGGGAAATTGCCTCCTGGATCTGGAGAAGGTCAGAAGTGGACAACTTTGCAGCACAGTGGAGTGATTTTCCCTCCGCCTTACAAGCCTCATGGAGTTAAGCTGCTTTAxxxTGGCAAGCCAGTTGATCTAACTCCTGAAGAAG

Fln Alignment:

Contig16179___KSITSSAXXXXXXXXXXXXXEGQK-WTTLQHSGVIFPPPYKPHGVKLLYxGKPVDLTPEE
P30181________________KKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYxGKPVDLTIEQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
125	66		33		0.997452
126	66			33	0.997452
127			33	66	0.997452
130		33		66	0.997452
132		66		33	0.997452
133			33	66	0.997452
141	66	33			0.997452
142			66	33	0.997452
143	66	33			0.997452
144	33		66		0.997452
160	75	25			0.996473
164		75	25		0.996473
165		75		25	0.996473
166		75	25		0.996473
178	75			25	0.996473
180	75			25	0.996473
181		25	75		0.996473
188	25	75			0.996473
200			75	25	0.996473
236		75		25	0.996473
328		80	20		0.995493
332	80			20	0.995493
334	20	80			0.995493
337	80			20	0.995493
338	80			20	0.995493
340		80	20		0.995493
341	80	20			0.995493
342		80		20	0.995493
347		20		80	0.995493
1238	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain