SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16178

Length: 2265 nt

UniGene Fasta

>uagpf_v2_unigene16178
CGTCGTGACCTTGGCTGTCACTCAATCGAAGAGCTCTGGGGTAAATCCGTATCCCCACAAGTTTCACGTCTCTTCATCTCTCCCCGAGTTCATAAATAAGTATGCAAATTTAAACAGTGTGGTGACCTTGGCTGTCGCTGTTTCTCTAGCTGGGAGAATCATGAGTAAGAGAAGTTCAGGGGCAAAGCTGAACTTCTATGATTTACACAGCGATGGAGCAAAAGTACAGGTCATGGCTGATGCAAGGAACTCAGGAATGGAGGAGGATGAGTTCATTAGGCATCATGCTGGTGTGAAGCGTGGTGATATTGTTGGTATTTGTGGCTTTCCAGGAAAAAGCAAAAGGGGAGAACTTAGCATATTTCCTGTATCCTTTTTAGTTCTTTCGCCTTGTCTACACATGATGCCAAGGCAAAGAGCTCTCCCAGCAAAAGACCACCAGGCTCAGACAAAGGAAAATGAGGGAGATAAAACGACTGATATATGGTCTCCTGGTCAGCCTAGAAACCCTGAACGATATGTTCTGAAAGACCAGGAAACAAGATATCGGCAACGTTATCTAGATTTGATGGTCAACTCAGAGGTTAGGCATATCTTCAAAACAAGAGCAAAGATAATATCTTATGTGCGGAAGTTCTTTGATGACCTTGACTTTCTTGAGGTAGAAACGCCAATGATGAATATGATAGCTGGTGGAGCTGCTGCTAGGCCATTTGTTACTCATCACAATGACCTTAATATGAAGCTATATATGCGCATTGCCCCGGAGCTTTATCTGAAAGAATTGATCGTGGGTGGACTTGATCGTGTGTATGAAATTGGGAAACAATTTCGTAATGAGGGCATTGATTTAACTCATAACCCAGAGTTCACTACTTGTGAATTTTACATGGCCTATGCCGACTATAATGACGTGATGGAACTGACAGAAAAGTTGTTATCAGGGATGGTCAAGAAGTTAACTGGTGGCTATAAAATCCTTTACCATGCTAATGGGGTGGACAAGGATCCTATAGAAATTGATTTCACTCCTCCGTTCAGAAGGATAGACATGCTTCAAGGGTTGGAAGAGGCTGCACAACTCAACATCCCTAAAGATATCTCATCTGAGGAGGCAAACAAGTATCTTTTGGCTGCGTGTGAGAAGTTTGATGTGAAATGCCCTCCTCCTCAAACAACCACACGGTTGTTGGACAAGCTTGTCGGACATTTCTTGGAGGAGCAGTGTGTAAATCCATCATTCATCATAAATCATCCTCAGATCATGAGCCCTTTGGCAAAGTGGCACAGGACAAGGCCAGGGTTGACTGAACGTTTTGAACTCTTTGTTAATAAACACGAGGTGTGCAATGCCTATACCGAGCTTAATGATCCAGTTGTCCAGCGTGAGCGCTTTGCAGATCAGCTTAAGGACAGACAATCAGGTGATGATGAAGCAATGGCTCTTGACGAGACATTTTGCACTGCGTTAGAGTATGGCTTACCACCAACTGGTGGTTGGGGAATGGGCATTGATCGACTTGCCATGATGTTAACAGACTCTCAGAATATAAAGGAGGTTTTACTTTTCCCTGCAATGAAACCTCAAGAATAGCTTTTTTCAAAGGTTGAACGTTTGATGACGGAGGTGGGATTTGGTCACATGCTGCTCGAGGAGACTCTGGAAATACTTGTAGGCCTATTTACAGTTGTCATGATGATTTTCTTTGCAGCTGAATAGCATAAATTCTCGGCCACTAGTGAAGTGCCGTTTCACACCCCAAAGTTGCGGACAAAAGAAAGCAGCGTTATAACAATACAATATTGGAAACATTTCAAGACGAGTTCAAATTTTTACAAGTATCTTCTCAGCTTTCATAAAATTTGAGACATGTAATTTTCAGTTCATTAGCTGGCCTTTTCAGAAGAGGGAATTTTGGTATTAGTATCTCCTTTACTTTCAAGGAATGATTGGGTATCATTTCATTTTACATCACATTGTTTTAATTTGAAATTTAATCTGGTAATTTTCTCCGAAGAAAAGTCATCTGTGGCGACTGGCTGAGCAAAGGAAATGAAATTTGGGTTTAAACAGTACATAAAATACTTTCACGAAAAACCTATCATAGTTTTTTCAACAATAAATAGTTTTAAAATAATCCAAGATTGGGGCTCGCCCCCAATATTCCCTTACAATGATTGGACACGGCTCAATTTTTTTGACTCCCCTCACCTAGTGCTGGTGCATTAATTTAGCCAATATGTTCAATTCCAATTTGTGGTTGC

Ace file of the UniGene uagpf_v2_unigene16178

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17576	84/89
SustainPine v2.0	sp_v2.0_unigene78860	2/89

Source	Descriptions	Term	Type	Identity
AutoFact	Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	lysyl-trna synthetase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lysine--tRNA ligase.	EC:6.1.1.6	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	86%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	86%
Blast2go	binding	GO:0005488	Molecular Function	86%
Blast2go	lysine-tRNA ligase activity	GO:0004824	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Lysyl-tRNA synthetase, class II	IPR002313	-	-
Sma3	Lysyl-tRNA synthetase, class II, C-terminal	IPR018149	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX07

Fln msg: your sequence is shorter than subject: 531 - 566

Fln protein: VVTLAVTQSKSSGVNPYPHKFHVSSSLPEFINKYANLNSVVTLAVAVSLAGRIMSKRSSGAKLNFYDLHSDGAKVQVMADARNSGMEEDEFIRHHAGVKRGDIVGICGFPGKSKRGELSIFPVSFLVLSPCLHMMPRQRALPAKDHQAQTKENEGDKTTDIWSPGQPRNPERYVLKDQETRYRQRYLDLMVNSEVRHIFKTRAKIISYVRKFFDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELIVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDVMELTEKLLSGMVKKLTGGYKILYHANGVDKDPIEIDFTPPFRRIDMLQGLEEAAQLNIPKDISSEEANKYLLAACEKFDVKCPPPQTTTRLLDKLVGHFLEEQCVNPSFIINHPQIMSPLAKWHRTRPGLTERFELFVNKHEVCNAYTELNDPVVQRERFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGMGIDRLAMMLTDSQNIKEVLLFPAMKPQE*

Protein Length: 532

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGAAGAGCTCTGGGGTAAATCCGTATCCCCACAAGTTTCACGTCTCTTCATCTCTCCCCGAGTTCATAAATAAGTATGCAAATTTAAACAGTGTGGTGACCTTGGCTGTCGCTGTTTCTCTAGCTGGGAGAATCATGAGTAAGAGAAGTTCAGGGGCAAAGCTGAACTTCTATGATTTACACAGCGATGGAGCAAAAGTACAGGTCATGGCTGATGCAAGGAACTCAGGAATGGAGGAGGATGAGTTCATTAGGCATCATGCTGGTGTGAAGCGTGGTGATATTGTTGGTATTTGTGGCTTTCCAGGAAAAAGCAAAAGGGGAGAACTTAGCATATTTCCTGTATCCTTTTTAGTTCTTTCGCCTTGTCTACACATGATGCCAAGGCAAAGAGCTCTCCCAGCAAAAGACCACCAGGCTCAGACAAAGGAAAATGAGGGAGATAAAACGACTGATATATGGTCTCCTGGTCAGCCTAGAAACCCTGAACGATATGTTCTGAAAGACCAGGAAACAAGATATCGGCAACGTTATCTAGATTTGATGGTCAACTCAGAGGTTAGGCATATCTTCAAAACAAGAGCAAAGATAATATCTTATGTGCGGAAGTTCTTTGATGACCTTGACTTTCTTGAGGTAGAAACGCCAATGATGAATATGATAGCTGGTGGAGCTGCTGCTAGGCCATTTGTTACTCATCACAATGACCTTAATATGAAGCTATATATGCGCATTGCCCCGGAGCTTTATCTGAAAGAATTGATCGTGGGTGGACTTGATCGTGTGTATGAAATTGGGAAACAATTTCGTAATGAGGGCATTGATTTAACTCATAACCCAGAGTTCACTACTTGTGAATTTTACATGGCCTATGCCGACTATAATGACGTGATGGAACTGACAGAAAAGTTGTTATCAGGGATGGTCAAGAAGTTAACTGGTGGCTATAAAATCCTTTACCATGCTAATGGGGTGGACAAGGATCCTATAGAAATTGATTTCACTCCTCCGTTCAGAAGGATAGACATGCTTCAAGGGTTGGAAGAGGCTGCACAACTCAACATCCCTAAAGATATCTCATCTGAGGAGGCAAACAAGTATCTTTTGGCTGCGTGTGAGAAGTTTGATGTGAAATGCCCTCCTCCTCAAACAACCACACGGTTGTTGGACAAGCTTGTCGGACATTTCTTGGAGGAGCAGTGTGTAAATCCATCATTCATCATAAATCATCCTCAGATCATGAGCCCTTTGGCAAAGTGGCACAGGACAAGGCCAGGGTTGACTGAACGTTTTGAACTCTTTGTTAATAAACACGAGGTGTGCAATGCCTATACCGAGCTTAATGATCCAGTTGTCCAGCGTGAGCGCTTTGCAGATCAGCTTAAGGACAGACAATCAGGTGATGATGAAGCAATGGCTCTTGACGAGACATTTTGCACTGCGTTAGAGTATGGCTTACCACCAACTGGTGGTTGGGGAATGGGCATTGATCGACTTGCCATGATGTTAACAGACTCTCAGAATATAAAGGAGGTTTTACTTTTCCCTGCAATGAAACCTCAAGAATAG___CTTTTTTCAAAGGTTGAACGTTTGATGACGGAGGTGGGATTTGGTCACATGCTGCTCGAGGAGACTCTGGAAATACTTGTAGGCCTATTTACAGTTGTCATGATGATTTTCTTTGCAGCTGAATAGCATAAATTCTCGGCCACTAGTGAAGTGCCGTTTCACACCCCAAAGTTGCGGACAAAAGAAAGCAGCGTTATAACAATACAATATTGGAAACATTTCAAGACGAGTTCAAATTTTTACAAGTATCTTCTCAGCTTTCATAAAATTTGAGACATGTAATTTTCAGTTCATTAGCTGGCCTTTTCAGAAGAGGGAATTTTGGTATTAGTATCTCCTTTACTTTCAAGGAATGATTGGGTATCATTTCATTTTACATCACATTGTTTTAATTTGAAATTTAATCTGGTAATTTTCTCCGAAGAAAAGTCATCTGTGGCGACTGGCTGAGCAAAGGAAATGAAATTTGGGTTTAAACAGTACATAAAATACTTTCACGAAAAACCTATCATAGTTTTTTCAACAATAAATAGTTTTAAAATAATCCAAGATTGGGGCTCGCCCCCAATATTCCCTTACAATGATTGGACACGGCTCAATTTTTTTGACTCCCCTCACCTAGTGCTGGTGCATTAATTTAGCCAATATGTTCAATTCCAATTTGTGGTTGC

Fln Alignment:

Contig16178___GRIMSKRSSGAKLNFYDLHSDGAKVQVMADARNSGMEEDEFIRHHAGVKRGDIVGICGF--------PGKSKRGELSIFPVSFLVLSPCLHMMPRQRALPAKDHQAQTKENEGDKTTDIWSPGQPRNPERYVLKDQETRYRQRYLDLMVNSEVRHIFKTRAKIISYVRKFFDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELIVGGLDRVYEIGKQFRNE-GIDLTHNPEFTTCEFYMAYAD-YNDVMELTEKLLSGMVKKLTGGYKILYHANGVDKDPIEIDFTPPFRRIDMLQGLEEAAQLNIP----KDISSEEANKYLLAACEKFDVKCPPPQTTTRLLDKLVGHFLEEQCVNPSFIINHPQIMSPLAKWHRTRPGLTERFELFVNKHEVCNAYTELNDPVVQRERFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGMGIDRLAMMLTDSQNIKEVLLFP
A9NX07________________GRAHAIRGVSSKMAFLVVREAGYTVQCVLNV-NPGVVSKGMVKFVTGLSKESIVDVEGIVTVPNIAITGASQQVEIHVRKVYCVSKS--------QPTLPINLEDAARSEKEFEKAE--------QTGEHVVRVGQDTRLNYRVLDLRTPAN-QGIFRVQSYVSMLFRQFLISEGFVELHTP--KLIAGASEGGSSVFKLDYKGQPACLAQSPQLHKQMAICADFGRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYFEVLDILDKLFITIFDGLNEHCKKELHAINQQYPFEPLKYLRKTLRLTFQEGVQMLKEAGIEVDPLGDFNTETERKLGGLVREKYD-------TDFYILHRY------PLAVRPFYTM--PCIDDPL---------YSNSFDVFIRGEEIISGAQRVHEPEFLTKR------AKELGID--VNTISTYIDSFRWGAVPHGGLGVGLERVVMLFCALNNIRKTSLFP

SNPs (tot: 133)

Position	A %	C %	G %	T %	Probability
396		80		20	0.995493
398			20	80	0.995493
401		20		80	0.995493
404	80			20	0.995493
405		80	20		0.995493
406	80		20		0.995493
413		20	80		0.995493
414	20	80			0.995493
416	80			20	0.995493
417	80	20			0.995493
418	20		80		0.995493
484	80			20	0.995493
489		20		80	0.995493
490	80	20			0.995493
492	80			20	0.995493
493			20	80	0.995493
500	20	80			0.995493
560	87		12		0.992554
561	87			12	0.992554
565			12	87	0.992554
567		12		87	0.992554
570	87		12		0.992554
572	87	12			0.992554
574			12	87	0.992554
576		12	87		0.992554
608	72	27			1.0
609	72		27		1.0
610	72			27	1.0
612	72		27		1.0
613	72			27	1.0
616		27	72		1.0
618	72			27	1.0
619	72			27	1.0
620	72		27		1.0
622	72	27			1.0
625	72		27		1.0
627	72	27			1.0
628	27			72	1.0
631		18		81	0.999994
798		66		33	1.0
911	88		11		0.923564
912		88		11	0.923564
914	88	11			0.923564
915			11	88	0.923564
916	88	11			0.923564
1040		66	33		0.997452
1043		66		33	0.997452
1045	33			66	0.997452
1046		33		66	0.997452
1048	66			33	0.997452
1050	66		33		0.997452
1051	66	33			0.997452
1052			66	33	0.997452
1054	66			33	0.997452
1055		33		66	0.997452
1057		33	66		0.997452
1058	66			33	0.997452
1070		25	75		0.996473
1073		25		75	0.996473
1077	75	25			0.996473
1078			75	25	0.996473
1079	75			25	0.996473
1086	75			25	0.996473
1107		20		80	0.995493
1108	80		20		0.995493
1112		80	20		0.995493
1114		20		80	0.995493
1117			80	20	0.995493
1118	80		20		0.995493
1120		20	80		0.995493
1121	80			20	0.995493
1123			80	20	0.995493
1126	80	20			0.995493
1127	80			20	0.995493
1202	16	16			0.988813
1203	16			83	0.994512
1204		33	66		1.0
1205			83	16	0.994512
1206	83	16			0.994512
1207	16	16			0.988813
1209	83			16	0.994512
1210	83			16	0.994512
1212		83	16		0.994512
1213		16		83	0.994512
1218	16		83		0.994512
1219		16	83		0.994512
1220	83			16	0.994512
1620		20	80		0.995493
1623		20		80	0.995493
1625	80		20		0.995493
1628		20	80		0.995493
1631			20	80	0.995493
1633	80	20			0.995493
1636	80			20	0.995493
1642		20	80		0.995493
1645		20	80		0.995493
1646	20		80		0.995493
1677		11	77		0.968132
1678	11		88		0.923564
1679	77	11		11	0.968132
1680	66	22	11		0.999999
1681	77	11		11	0.968132
1683	66	11	22		0.999999
1684		77	22		0.999999
1685		22		77	0.999999
1688			11	88	0.923564
1689	88			11	0.923564
1690		22	77		0.999999
1691			66	33	1.0
1693	22	66			0.999999
1696		11		88	0.923564
1736	11			88	0.923564
1748	10	90			0.90298
1753	90			10	0.90298
1756	80		20		0.999996
1757	88	11			0.923564
1758	88			11	0.923564
1761	11		88		0.923564
1764	11		88		0.923564
1817	87	12			0.992554
1818			12	87	0.992554
1820		12	87		0.992554
1822	87			12	0.992554
1823	87		12		0.992554
1826	87	12			0.992554
1829			12	87	0.992554
1830		87	12		0.992554
1831	87	12			0.992554
1832	87			12	0.992554
1834	87			12	0.992554
1835		87		12	0.992554
1840		14		85	0.999981
2098		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain