SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16118

Length: 335 nt

UniGene Fasta

>uagpf_v2_unigene16118
CGTCGTGACCTTGGCTGTCACTCAATATCAGTTAGCATGACTCTTCATCAAACAAGCTTTTGCTTTATTTGTAGCCATTTGACTTCTGGCCAGAAAGATGGCGATGAGCTCCGGAGGAATTCTGATGTCATGGAAATCATAAAAAAGACTCGCTTTCCACGGGTTTGTAGATCTGCTGGAGAGGATTCACCTGAAACTATTTTGCAGCACGAGTAAGTCTGAATTGAATACTTTAGAAGGATCATCTTTTTGTTCCCACATCATTGAGTTGAACTTTAATATTTTAAATTGTTTCTGAAGGATTTATGTTCTACTTTGCTTATTGCTTGAGTCCA

Ace file of the UniGene uagpf_v2_unigene16118

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30884	1/5
SustainPine v2.0	sp_v2.0_unigene73669	3/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein CVP2 like 1 [Arabidopsis thaliana] ref\|NP_001189654.1\| protein CVP2 like 1 [Arabidopsis thaliana] dbj\|BAF00758.1\| putative inositol polyphosphate 5'-phosphatase [Arabidopsis thaliana] gb\|AEC08621.1\| protein CVP2 like 1 [Arabidopsis thaliana] gb\|AE	-	-	1.0e-14	77%
FL-Next	Isoform 2 of Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2	-	-	0.0	78%
Blast2go	type i inositol- -trisphosphate 5-phosphatase cvp2-like	-	-	1.82645e-17	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	1.82645e-17	87%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.82645e-17	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	0.0	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LR47-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 118 aas, your sequence is shorter than subject: 72 - 506

Fln protein: RRDLGCHSISVSMTLHQTSFCFICSHLTSGQKDGDELRRNSDVMEIIKKTRFPRVCRSAGEDSPETILQHE*

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCAGTTAGCATGACTCTTCATCAAACAAGCTTTTGCTTTATTTGTAGCCATTTGACTTCTGGCCAGAAAGATGGCGATGAGCTCCGGAGGAATTCTGATGTCATGGAAATCATAAAAAAGACTCGCTTTCCACGGGTTTGTAGATCTGCTGGAGAGGATTCACCTGAAACTATTTTGCAGCACGAGTAAGTCTGAATTGAATACTTTAGAAGGATCATCTTTTTGTTCCCACATCATTGAGTTGAACTTTAATATTTTAAATTGTTTCTGAAGGATTTATGTTCTACTTTGCTTATTGCTTGAGTCCA

Fln Alignment:

Contig16118___SISVSMTLHQTSFCFICSHLTSGQKDGDELRRNSDVMEIIKKTRFPRVCRSAGEDSPETILQHE
Q9LR47-2______________SISISMLLHQTSFCFVCTHLTSGQKEGDELKRNSDVMEILKKTRFPRVKSSEEEKSPENILQHD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
147	33		66		0.997452
174		33		66	0.997452
206		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain