SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene16002

Length: 635 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene16002

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11793	20/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF protein n=1 Tax=Glycine max RepID=D9IXB2_SOYBN	-	-	6.0e-21	53%
FL-Next	sp=Ethylene-responsive transcription factor ERF106; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	ethylene-responsive transcription factor 5-like	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	70%
Blast2go	response to cold	GO:0009409	Biological Process	70%
Blast2go	response to chitin	GO:0010200	Biological Process	70%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	70%
Blast2go	DNA binding	GO:0003677	Molecular Function	70%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
166	33	66			0.997452
167	33		66		0.997452
169	33	66			0.997452
174		66	33		0.997452
177	33			66	0.997452
179		33	66		0.997452
180	33	66			0.997452
181	33			66	0.997452
182	33		66		0.997452
186		66	33		0.997452
187	33			66	0.997452
326	33	66			0.997452
336	33		66		0.997452
339	33		66		0.997452
349	89	10			0.999919
405	83			5	0.999887
409	33	5	61		1.0
615	80		20		0.999999
617		80		20	0.999999
621	80		20		0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
235	246	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain